Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G470000.1 | Wheat | nucleus | 95.6 | 91.02 |
| TraesCS3A01G435000.1 | Wheat | nucleus | 94.97 | 90.42 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 89.94 | 89.94 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 84.28 | 80.72 |
| TraesCS3D01G427900.1 | Wheat | nucleus | 84.28 | 80.24 |
| Os01t0922800-01 | Rice | nucleus | 72.33 | 70.12 |
| TraesCS4D01G346300.1 | Wheat | nucleus | 84.28 | 64.73 |
| Solyc10g017640.1.1 | Tomato | nucleus | 23.9 | 62.3 |
| TraesCS7D01G037000.1 | Wheat | cytosol | 23.27 | 60.66 |
| OQU86329 | Sorghum | nucleus | 64.78 | 60.23 |
| Zm00001d039913_P002 | Maize | nucleus | 64.78 | 59.2 |
| KRH48297 | Soybean | nucleus | 28.93 | 51.69 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 38.36 | 48.41 |
| TraesCS7D01G261900.1 | Wheat | nucleus | 44.65 | 32.42 |
| KRH00625 | Soybean | nucleus | 39.62 | 30.14 |
| KRH40554 | Soybean | nucleus | 39.62 | 29.86 |
| Bra039324.1-P | Field mustard | nucleus | 39.62 | 29.58 |
| CDY37054 | Canola | nucleus | 39.62 | 29.58 |
| CDY27368 | Canola | nucleus | 38.99 | 29.11 |
| Bra000393.1-P | Field mustard | nucleus | 38.36 | 28.64 |
| CDY60689 | Canola | nucleus | 38.36 | 28.64 |
| CDY53886 | Canola | nucleus | 38.36 | 28.64 |
| AT2G45660.1 | Thale cress | nucleus | 38.36 | 28.5 |
| CDX74755 | Canola | nucleus | 37.74 | 28.17 |
| Bra004928.1-P | Field mustard | nucleus | 37.74 | 28.17 |
| CDY69077 | Canola | nucleus | 37.74 | 28.17 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 38.99 | 27.93 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 39.62 | 27.39 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 39.62 | 27.27 |
| TraesCS6D01G014600.1 | Wheat | nucleus | 42.77 | 26.25 |
| PGSC0003DMT400000028 | Potato | nucleus | 35.85 | 25.45 |
| PGSC0003DMT400026576 | Potato | nucleus | 33.33 | 24.77 |
| KRH65189 | Soybean | nucleus | 36.48 | 24.47 |
| KRH48299 | Soybean | nucleus | 6.92 | 8.03 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF213 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS3D01G428000 | EnsemblPlants:TraesCS3D01G428000.1 |
| TIGR:cd00265 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:541598744..541632626
Molecular Weight (calculated)
17569.4 Da
IEP (calculated)
9.468
GRAVY (calculated)
-0.818
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRGRVELR RIEDRTSRQV RFSKRRAGLF KKAFELAVLC DAEVSLLVFS PAGRLYEYAS SSIEGTYDRY QAFAGAGKDV NEPGASNNND GDPSNIQSRL
101: EEITSWSLQN NADNSDANEL EKLEKLLTDA LKNTKSKKML AQQNSDAGTS ASGGNSRRT
101: EEITSWSLQN NADNSDANEL EKLEKLLTDA LKNTKSKKML AQQNSDAGTS ASGGNSRRT
001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
Arabidopsis Description
AGL79AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.