Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G311100.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS2B01G328000.1 | Wheat | nucleus | 98.51 | 98.51 |
| Bra016128.1-P | Field mustard | nucleus | 24.26 | 79.03 |
| KXG26379 | Sorghum | nucleus | 73.76 | 72.68 |
| Zm00001d025479_P001 | Maize | nucleus | 71.29 | 72.36 |
| PGSC0003DMT400048352 | Potato | nucleus | 36.63 | 63.79 |
| VIT_18s0041g02140.t01 | Wine grape | nucleus | 54.46 | 55.56 |
| Solyc11g032100.1.1 | Tomato | nucleus | 54.95 | 55.22 |
| KRH39983 | Soybean | nucleus | 52.48 | 52.22 |
| TraesCS7D01G315900.1 | Wheat | mitochondrion, nucleus | 59.41 | 51.72 |
| KRH23802 | Soybean | nucleus | 50.0 | 49.51 |
| CDX72816 | Canola | mitochondrion, nucleus | 48.51 | 48.51 |
| CDY03698 | Canola | mitochondrion, nucleus | 50.49 | 48.34 |
| Bra007972.1-P | Field mustard | nucleus | 50.49 | 48.34 |
| CDY37947 | Canola | nucleus | 50.0 | 47.87 |
| Bra003919.1-P | Field mustard | nucleus | 50.0 | 47.64 |
| AT1G71692.1 | Thale cress | nucleus | 49.51 | 47.39 |
| CDX96334 | Canola | nucleus | 49.01 | 46.48 |
| CDY36686 | Canola | mitochondrion, nucleus | 46.53 | 44.55 |
| PGSC0003DMT400048353 | Potato | nucleus | 16.83 | 41.46 |
| Bra016129.1-P | Field mustard | nucleus | 16.83 | 36.17 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF331 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS2D01G309300 | EnsemblPlants:TraesCS2D01G309300.1 | TIGR:cd00265 | : |
Description
No Description!
Coordinates
chr2D:-:396662811..396664609
Molecular Weight (calculated)
23394.6 Da
IEP (calculated)
7.620
GRAVY (calculated)
-0.489
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVMVFSP HGKVYELATN GNMQGLIERY KGSNTEAHGE SSEQNKPEVI QQEVLLLRQE
101: IDLLQKGLRY MYGENDINHM NLNELQALES NLEIWVHNIR YTKMQIISRE IEMLKTKEGI LKAANDILQE RIIEQSGILD TGSNMMMPQF PFQRTMEGGY
201: YF
101: IDLLQKGLRY MYGENDINHM NLNELQALES NLEIWVHNIR YTKMQIISRE IEMLKTKEGI LKAANDILQE RIIEQSGILD TGSNMMMPQF PFQRTMEGGY
201: YF
001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
Arabidopsis Description
AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.