CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00625
KRH39494
KRH40554
KRH42047
KRH65189
KRH74451

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	KRH00625	AT2G45660.1	15805477
AT1G71692.1	KRH40554	AT2G45660.1	15805477
AT1G71692.1	KRH65189	AT2G45660.1	15805477
AT1G71692.1	KRH42047	AT3G57230.1	15805477
AT1G71692.1	KRH39494	AT4G37940.1	15805477
AT1G71692.1	KRH74451	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016128.1-P	Field mustard	nucleus	26.11	85.48
KRH23802	Soybean	nucleus	82.76	82.35
PGSC0003DMT400048352	Potato	nucleus	41.87	73.28
Solyc11g032100.1.1	Tomato	nucleus	65.02	65.67
VIT_18s0041g02140.t01	Wine grape	nucleus	63.05	64.65
CDX72816	Canola	mitochondrion, nucleus	63.55	63.86
AT1G71692.1	Thale cress	nucleus	64.53	62.09
CDY03698	Canola	mitochondrion, nucleus	64.04	61.61
Bra007972.1-P	Field mustard	nucleus	63.55	61.14
CDX96334	Canola	nucleus	64.04	61.03
Bra003919.1-P	Field mustard	nucleus	63.55	60.85
CDY37947	Canola	nucleus	63.05	60.66
Bra016129.1-P	Field mustard	nucleus	26.11	56.38
CDY36686	Canola	mitochondrion, nucleus	57.64	55.45
PGSC0003DMT400048353	Potato	nucleus	22.17	54.88
TraesCS2A01G311100.1	Wheat	nucleus	52.22	52.48
TraesCS2D01G309300.1	Wheat	nucleus	52.22	52.48
Os08t0112700-01	Rice	nucleus	56.65	51.8
EES13239	Sorghum	mitochondrion, nucleus	56.65	51.8
GSMUA_Achr11P...	Banana	nucleus	56.16	50.89
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	56.16	49.78
Zm00001d025479_P001	Maize	nucleus	48.77	49.75
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	56.16	49.57
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	56.16	49.14
Os12t0206800-00	Rice	nucleus	48.77	49.01
KXG26379	Sorghum	nucleus	49.26	48.78
GSMUA_Achr7P02960_001	Banana	nucleus	56.65	48.52
Zm00001d035053_P002	Maize	nucleus	43.84	45.41
OQU78925	Sorghum	nucleus	47.78	44.91
Zm00001d049692_P001	Maize	nucleus	53.69	41.44
TraesCS1B01G467500.1	Wheat	nucleus	2.96	6.12

Protein Annotations

EntrezGene:100815314	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02006014	EnsemblPlantsGene:GLYMA_09G231600	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	UniProt:I1L5Q4	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EnsemblPlants:KRH39983
ProteinID:KRH39983	ProteinID:KRH39983.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001B36E33	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:45484965..45488922

Molecular Weight (calculated)

22992.1 Da

IEP (calculated)

9.269

GRAVY (calculated)

-0.296

Length

203 amino acids

Sequence
(BLAST)

001: MARGKVQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK GTMQGLIERY MKFTRGAQPE AAAPEAHPLL VAKEETNALK
101: QEIQTLQKGI SYLFEGGNKT MAIDELQLLE KNLETWIYHI RSMKMNIMLQ EIQALKDKEG TLKAANKYLH DKIVENTAIS NFAEFATDTS YPLIVQDGGF
201: QLY

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.