CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01980
KXG25532
KXG39016
OQU80503
OQU81712
OQU85202
OQU85464
OQU86329
OQU93352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	EES01980	AT2G45660.1	15805477
AT1G71692.1	KXG25532	AT2G45660.1	15805477
AT1G71692.1	KXG39016	AT2G45660.1	15805477
AT1G71692.1	OQU86329	AT2G45660.1	15805477
AT1G71692.1	OQU93352	AT2G45660.1	15805477
AT1G71692.1	OQU80503	AT3G57230.1	15805477
AT1G71692.1	OQU81712	AT3G57230.1	15805477
AT1G71692.1	OQU85202	AT3G57230.1	15805477
AT1G71692.1	OQU85464	AT3G57230.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0112700-01	Rice	nucleus	87.39	87.39
TraesCS7B01G220200.1	Wheat	mitochondrion, nucleus	88.74	86.03
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	86.94	83.91
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	86.04	83.41
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	85.59	81.9
Bra016128.1-P	Field mustard	nucleus	21.62	77.42
Zm00001d035053_P002	Maize	nucleus	67.12	76.02
Zm00001d049692_P001	Maize	nucleus	77.03	65.02
PGSC0003DMT400048352	Potato	nucleus	32.43	62.07
GSMUA_Achr11P...	Banana	nucleus	59.91	59.38
Solyc11g032100.1.1	Tomato	nucleus	52.7	58.21
VIT_18s0041g02140.t01	Wine grape	nucleus	50.9	57.07
KRH23802	Soybean	nucleus	52.25	56.86
KRH39983	Soybean	nucleus	51.8	56.65
GSMUA_Achr7P02960_001	Banana	nucleus	58.11	54.43
PGSC0003DMT400048353	Potato	nucleus	19.82	53.66
AT1G71692.1	Thale cress	nucleus	50.9	53.55
CDY03698	Canola	mitochondrion, nucleus	50.45	53.08
Bra007972.1-P	Field mustard	nucleus	50.45	53.08
CDX72816	Canola	mitochondrion, nucleus	48.2	52.97
CDY37947	Canola	nucleus	50.0	52.61
Bra003919.1-P	Field mustard	nucleus	50.0	52.36
KXG26379	Sorghum	nucleus	47.75	51.71
CDX96334	Canola	nucleus	49.55	51.64
CDY36686	Canola	mitochondrion, nucleus	45.05	47.39
OQU78925	Sorghum	nucleus	41.89	43.06
Bra016129.1-P	Field mustard	nucleus	18.02	42.55

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8066077	UniProt:C5YLY7	EnsemblPlants:EES13239	ProteinID:EES13239
ProteinID:EES13239.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	SMART:SM00432	EnsemblPlantsGene:SORBI_3007G013800	SUPFAM:SSF55455
unigene:Sbi.5099	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001A87737	RefSeq:XP_002443744.1

Description

hypothetical protein

Coordinates

chr7:+:1216492..1219957

Molecular Weight (calculated)

25153.6 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.333

Length

222 amino acids

Sequence
(BLAST)

001: MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD AHIGIIIFSA HGKLYDLATT GTMEELIDRY KTASGEAADG SGDNRMDPKQ ETMVLQQEIN
101: LLQKGLRYIY GNRANEHMNV DELNALERYL EIWMYNIRSA KMQIMIQEIQ ALKSKEGMLK AANEILREKI VEQSSLLDVG MVVADQQNGH FSTVPLIEEI
201: TNPLTILSGY SNCRGSEMGY SF

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.