CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01980
KXG25532
KXG39016
OQU80503
OQU81712
OQU85202
OQU85464
OQU86329
OQU93352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	EES01980	AT2G45660.1	15805477
AT1G71692.1	KXG25532	AT2G45660.1	15805477
AT1G71692.1	KXG39016	AT2G45660.1	15805477
AT1G71692.1	OQU86329	AT2G45660.1	15805477
AT1G71692.1	OQU93352	AT2G45660.1	15805477
AT1G71692.1	OQU80503	AT3G57230.1	15805477
AT1G71692.1	OQU81712	AT3G57230.1	15805477
AT1G71692.1	OQU85202	AT3G57230.1	15805477
AT1G71692.1	OQU85464	AT3G57230.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016128.1-P	Field mustard	nucleus	20.37	70.97
Os12t0206800-00	Rice	nucleus	61.11	65.35
PGSC0003DMT400048352	Potato	nucleus	28.24	52.59
Solyc11g032100.1.1	Tomato	nucleus	48.15	51.74
VIT_18s0041g02140.t01	Wine grape	nucleus	46.76	51.01
PGSC0003DMT400048353	Potato	nucleus	18.52	48.78
KXG26379	Sorghum	nucleus	45.37	47.8
KRH39983	Soybean	nucleus	44.91	47.78
KRH23802	Soybean	nucleus	44.44	47.06
CDX72816	Canola	mitochondrion, nucleus	43.98	47.03
Bra007972.1-P	Field mustard	nucleus	43.98	45.02
CDY03698	Canola	mitochondrion, nucleus	43.98	45.02
CDX96334	Canola	nucleus	43.98	44.6
CDY37947	Canola	nucleus	43.52	44.55
AT1G71692.1	Thale cress	nucleus	43.52	44.55
Bra003919.1-P	Field mustard	nucleus	43.52	44.34
Bra016129.1-P	Field mustard	nucleus	18.98	43.62
EES13239	Sorghum	mitochondrion, nucleus	43.06	41.89
CDY36686	Canola	mitochondrion, nucleus	37.96	38.86

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1Z5R641	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlants:OQU78925	ProteinID:OQU78925
ProteinID:OQU78925.1	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF338	SMART:SM00432	EnsemblPlantsGene:SORBI_3008G072800	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000B8BAD79	:	:

Description

hypothetical protein

Coordinates

chr8:-:9834537..9837178

Molecular Weight (calculated)

24875.1 Da

IEP (calculated)

9.618

GRAVY (calculated)

-0.548

Length

216 amino acids

Sequence
(BLAST)

001: MVRGKVQMRQ IENPVHRRVT FSKRREGLLK KARELSVLCG ADVGVIIFSS TGKVHELATN GNMQSLVERY QSITARDQME SKNLQSQVKE HLVSLLKEEI
101: CLLQHGLSRS TGGGAEDMRL DRLHALEKGL ELWYYQTRSA KMQIMQQEIH FLRNKENILK SENEILQQKE GILKAENKVL QQKVNEQNEF INNCLAFSGS
201: SYPMHYNINE SSLFKI

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.