Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003409_P001 | Maize | nucleus | 33.89 | 93.1 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 84.1 | 83.75 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 83.68 | 83.33 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 82.85 | 82.5 |
| OQU85202 | Sorghum | nucleus | 75.31 | 75.0 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 68.2 | 66.8 |
| HORVU2Hr1G080490.1 | Barley | nucleus, plastid | 83.68 | 65.36 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 62.76 | 63.83 |
| OQU80503 | Sorghum | nucleus | 59.83 | 62.45 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 63.6 | 62.04 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 61.09 | 61.86 |
| OQU85464 | Sorghum | nucleus | 61.92 | 61.16 |
| Bra017638.1-P | Field mustard | nucleus | 56.49 | 56.25 |
| CDY49287 | Canola | nucleus | 56.49 | 56.25 |
| CDX69036 | Canola | nucleus | 56.07 | 55.83 |
| CDX72465 | Canola | nucleus | 55.65 | 55.42 |
| CDX75412 | Canola | nucleus | 55.23 | 55.0 |
| AT3G57230.1 | Thale cress | nucleus | 54.81 | 54.58 |
| KRH42047 | Soybean | nucleus | 51.46 | 51.04 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 26.36 | 42.57 |
| Bra011509.1-P | Field mustard | nucleus | 51.05 | 42.07 |
| EER89250 | Sorghum | nucleus | 33.05 | 35.11 |
| EER97510 | Sorghum | nucleus | 35.98 | 33.99 |
| KXG37536 | Sorghum | nucleus | 33.47 | 33.2 |
| KXG23502 | Sorghum | nucleus | 30.96 | 33.18 |
| EER90862 | Sorghum | nucleus | 33.89 | 33.06 |
| EES07448 | Sorghum | nucleus | 34.31 | 32.16 |
| EES01878 | Sorghum | nucleus | 37.24 | 32.13 |
| EES15309 | Sorghum | nucleus | 32.22 | 31.95 |
| EER97012 | Sorghum | nucleus | 32.22 | 31.69 |
| OQU93000 | Sorghum | nucleus | 31.38 | 30.86 |
| EER95753 | Sorghum | nucleus | 34.73 | 30.74 |
| KXG26975 | Sorghum | nucleus | 30.13 | 30.64 |
| EES15827 | Sorghum | nucleus | 34.31 | 30.48 |
| EES00105 | Sorghum | nucleus | 34.31 | 30.48 |
| OQU77603 | Sorghum | nucleus | 31.8 | 26.03 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1Z5RD98 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlants:OQU81712 | ProteinID:OQU81712 |
| ProteinID:OQU81712.1 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3006G107700 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B4267CE | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:47720366..47742492
Molecular Weight (calculated)
27347.7 Da
IEP (calculated)
9.036
GRAVY (calculated)
-0.695
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELGILCD AEVGLVIFSS TGRLYEYAST SMKSVIDRYG RAKEEQQLVA NPNTELKFWQ REATSLRQQL
101: HNLQENHRQL MGQDLSGLGV KGLQNLENQL EMSVRCIRTK KDQLLVDEIH ELNRKGSLIQ QDNMELHRKV NLIRQENAEL YKLYEKEAAG EVNRDSTTPY
201: NFAVAENANI PIHLELNTTP QEHDVEPPAA PKLGLQLNP
101: HNLQENHRQL MGQDLSGLGV KGLQNLENQL EMSVRCIRTK KDQLLVDEIH ELNRKGSLIQ QDNMELHRKV NLIRQENAEL YKLYEKEAAG EVNRDSTTPY
201: NFAVAENANI PIHLELNTTP QEHDVEPPAA PKLGLQLNP
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.