Factsheet for Solyc01g106170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 3
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g093960.2.1
Solyc01g106170.2.1
Solyc02g071730.2.1
Solyc02g089200.2.1
Solyc02g091550.1.1
Solyc04g076280.2.1
Solyc05g056620.1.1
Solyc10g017640.1.1
Solyc11g032100.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57230.1	Solyc05g056620.1.1	AT1G69120.1	15805477
AT3G57230.1	Solyc11g032100.1.1	AT1G71692.1	15805477
AT3G57230.1	Solyc01g093960.2.1	AT2G45650.1	15805477
AT3G57230.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT3G57230.1	Solyc02g089200.2.1	AT3G02310.1	15805477
AT3G57230.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT3G57230.1	Solyc02g071730.2.1	AT4G18960.1	15805477
AT3G57230.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT3G57230.1	Solyc02g091550.1.1	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003409_P001	Maize	nucleus	41.89	71.26
TraesCS7D01G107200.1	Wheat	nucleus	37.84	57.73
TraesCSU01G209900.1	Wheat	nucleus	36.49	55.67
Os08t0431900-00	Rice	nucleus	41.22	38.36
Os06t0347700-00	Rice	nucleus	37.84	38.1
Solyc02g091550.1.1	Tomato	nucleus	47.3	29.79
CDX75412	Canola	nucleus	45.27	27.92
GSMUA_Achr3P07310_001	Banana	nucleus	45.95	27.87
CDY49287	Canola	nucleus	44.59	27.5
CDX72465	Canola	nucleus	44.59	27.5
CDX69036	Canola	nucleus	44.59	27.5
Zm00001d016957_P003	Maize	nucleus	44.59	27.5
Bra017638.1-P	Field mustard	nucleus	44.59	27.5
OQU85202	Sorghum	nucleus	44.59	27.5
GSMUA_Achr9P15540_001	Banana	nucleus	45.27	27.35
TraesCS2A01G337900.1	Wheat	nucleus	43.92	27.08
Os02t0579600-00	Rice	nucleus	43.92	27.08
TraesCS2D01G325000.1	Wheat	nucleus	43.92	27.08
TraesCS2B01G344000.1	Wheat	nucleus	43.92	27.08
HORVU5Hr1G000370.3	Barley	nucleus	37.84	27.05
OQU85464	Sorghum	nucleus	43.92	26.86
Zm00001d017932_P002	Maize	nucleus	42.57	26.69
OQU80503	Sorghum	nucleus	41.22	26.64
Os04t0304400-01	Rice	nucleus	40.54	26.43
OQU81712	Sorghum	nucleus	42.57	26.36
Os02t0731200-01	Rice	nucleus	42.57	26.14
Solyc03g019710.2.1	Tomato	nucleus	31.08	25.99
GSMUA_Achr7P12610_001	Banana	nucleus	41.22	25.96
AT3G57230.1	Thale cress	nucleus	41.89	25.83
HORVU6Hr1G073040.2	Barley	nucleus	41.89	25.73
TraesCS6A01G292300.2	Wheat	nucleus	41.22	25.31
TraesCS6D01G273500.2	Wheat	nucleus	41.22	25.31
TraesCS6B01G322700.2	Wheat	nucleus	41.22	25.31
GSMUA_Achr5P24560_001	Banana	nucleus	39.86	25.0
TraesCS7A01G111700.1	Wheat	nucleus	39.86	24.79
HORVU7Hr1G023940.2	Barley	nucleus	38.51	24.78
TraesCS7D01G106600.1	Wheat	nucleus	38.51	24.78
TraesCS7B01G009800.1	Wheat	nucleus	38.51	24.78
TraesCS7B01G009500.1	Wheat	nucleus	38.51	24.78
TraesCS7A01G111900.1	Wheat	nucleus	38.51	24.78
TraesCS7D01G106900.1	Wheat	nucleus	37.84	24.35
TraesCS7A01G111800.1	Wheat	nucleus	37.84	24.35
TraesCS1A01G045000.1	Wheat	nucleus	32.43	24.24
TraesCS5B01G002400.1	Wheat	nucleus	37.84	24.14
TraesCS5D01G002200.2	Wheat	nucleus	37.16	23.61
Bra011509.1-P	Field mustard	nucleus	45.27	23.1
HORVU2Hr1G080490.1	Barley	nucleus, plastid	47.3	22.88
KRH42047	Soybean	nucleus	37.16	22.82
Solyc11g028020.1.1	Tomato	nucleus	33.78	22.42
TraesCS1B01G058200.1	Wheat	nucleus	33.78	22.42
TraesCS1B01G058100.1	Wheat	nucleus	35.14	21.4
TraesCS1D01G045600.1	Wheat	nucleus	33.78	21.37
HORVU7Hr1G024000.2	Barley	nucleus	38.51	21.35
HORVU1Hr1G008290.4	Barley	nucleus	34.46	21.25
Zm00001d050897_P002	Maize	nucleus	45.27	21.2
TraesCS1D01G045700.1	Wheat	nucleus	33.78	21.19
TraesCS1D01G045500.1	Wheat	nucleus	34.46	20.99
TraesCS1A01G044900.1	Wheat	nucleus	34.46	20.99
Solyc02g071730.2.1	Tomato	nucleus	35.14	20.97
TraesCS1B01G058300.1	Wheat	nucleus	33.11	20.76
Solyc05g015750.2.1	Tomato	nucleus	33.11	20.33
Solyc05g012020.2.1	Tomato	nucleus	33.11	20.25
Solyc04g005320.2.1	Tomato	nucleus	31.76	19.75
Solyc07g055920.2.1	Tomato	nucleus	35.14	19.48
Solyc12g038510.1.1	Tomato	nucleus	32.43	19.2
Solyc03g114840.2.1	Tomato	nucleus	31.76	19.11
Solyc02g089200.2.1	Tomato	nucleus	31.76	19.11
Solyc01g093960.2.1	Tomato	nucleus	31.08	18.25
Solyc02g065730.1.1	Tomato	nucleus	28.38	17.95
HORVU1Hr1G008300.3	Barley	nucleus	33.11	17.25
Solyc02g089210.2.1	Tomato	nucleus	29.05	17.2
Solyc06g069430.2.1	Tomato	nucleus	28.38	17.14
Solyc03g114830.2.1	Tomato	nucleus	27.03	16.19
Solyc05g056620.1.1	Tomato	nucleus	25.68	15.57
Solyc12g088090.1.1	Tomato	nucleus	14.86	9.91
Solyc06g064840.2.1	Tomato	nucleus	10.14	7.46
Solyc04g076700.2.1	Tomato	nucleus	0.68	0.76

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K4B2I5
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc01g106170.2	EnsemblPlants:Solyc01g106170.2.1	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0002767536	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:94114096..94116824

Molecular Weight (calculated)

17033.2 Da

IEP (calculated)

10.975

GRAVY (calculated)

-0.175

Length

148 amino acids

Sequence
(BLAST)

001: MIFLDRCQRV RLLWCTRASR GSKISDYFFT KPIFLLSLSL SICRISLLSK SLKLSRLIKE MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD
101: AQVGLIIFSS TGKLYEFANN SMKSTIDRYN KIKEENNNMN PMSEVKVT

Best Arabidopsis Sequence Match ( AT4G37940.4 )
(BLAST)

001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KRNLIHQENL DLSRKVQRIH QENVELYKKA YMANTNGFTH REVAVADDES HTQIRLQLSQ
201: PEHSDYDTPP RANE

Arabidopsis Description

AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.