Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0347700-00 | Rice | nucleus | 56.6 | 61.22 |
| OQU80503 | Sorghum | nucleus | 82.39 | 57.21 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 69.81 | 45.49 |
| Os02t0731200-01 | Rice | nucleus | 66.67 | 43.98 |
| Bra017638.1-P | Field mustard | nucleus | 66.04 | 43.75 |
| CDX72465 | Canola | nucleus | 66.04 | 43.75 |
| CDY49287 | Canola | nucleus | 66.04 | 43.75 |
| CDX69036 | Canola | nucleus | 65.41 | 43.33 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 64.15 | 43.22 |
| CDX75412 | Canola | nucleus | 64.78 | 42.92 |
| Os02t0579600-00 | Rice | nucleus | 64.78 | 42.92 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 62.89 | 42.55 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 64.78 | 42.04 |
| Os04t0304400-01 | Rice | nucleus | 59.75 | 41.85 |
| AT3G57230.1 | Thale cress | nucleus | 62.89 | 41.67 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 38.36 | 41.22 |
| KRH42047 | Soybean | nucleus | 59.12 | 39.0 |
| Os06t0162800-01 | Rice | nucleus | 45.91 | 32.44 |
| Bra011509.1-P | Field mustard | nucleus | 59.12 | 32.41 |
| Os03t0753100-01 | Rice | nucleus | 45.28 | 30.13 |
| Os02t0682200-01 | Rice | nucleus | 46.54 | 29.6 |
| Os07t0605200-01 | Rice | nucleus | 45.91 | 29.32 |
| Os03t0752800-02 | Rice | nucleus | 44.65 | 28.86 |
| Os04t0580700-01 | Rice | nucleus | 45.91 | 28.74 |
| Os05t0203800-02 | Rice | nucleus | 48.43 | 28.31 |
| Os09t0507200-01 | Rice | nucleus | 44.03 | 28.23 |
| Os03t0215400-01 | Rice | nucleus | 45.28 | 28.02 |
| Os01t0886200-01 | Rice | nucleus | 45.91 | 27.55 |
| Os12t0207000-01 | Rice | nucleus | 45.91 | 27.04 |
| Os08t0531700-01 | Rice | nucleus | 42.14 | 26.91 |
| Os01t0201700-02 | Rice | nucleus | 45.91 | 26.45 |
| Os07t0108900-02 | Rice | nucleus | 43.4 | 25.84 |
| Os12t0501700-00 | Rice | nucleus | 37.74 | 25.75 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EMBL:AY177694 | EMBL:AY345220 | ProteinID:BAC99345.1 | ProteinID:BAF23780.1 |
| ProteinID:BAT05563.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os08g0431900 | EnsemblPlants:Os08t0431900-00 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 |
| UniProt:Q6VAM4 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00001BBA17 | : | : | : | : | : |
Description
MADS BOX GENE 23Transcription factor MADS23. (Os08t0431900-00)
Coordinates
chr8:-:20897215..20906881
Molecular Weight (calculated)
18363.0 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.664
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KARELSILCD AEVGLLVFSS TSRLYDFASS SMKSIIERYN ETKEDPHQTM NASSEAKLWQ QEAASLRQQL
101: HNLQEYHRQL LGQQLSGLDV EDLQNLESKL EMSLKNIRLR KDNVMMDQIQ ELSRKVVTT
101: HNLQEYHRQL LGQQLSGLDV EDLQNLESKL EMSLKNIRLR KDNVMMDQIQ ELSRKVVTT
001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
Arabidopsis Description
AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.