Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG26975 | Sorghum | nucleus | 70.47 | 76.17 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 20.08 | 76.12 |
| Os02t0682200-01 | Rice | nucleus | 72.83 | 74.0 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 64.57 | 69.79 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 64.96 | 68.18 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 64.57 | 67.21 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 60.63 | 63.64 |
| KRH65193 | Soybean | nucleus | 61.02 | 63.27 |
| KRH48304 | Soybean | nucleus | 61.02 | 63.27 |
| Solyc01g093960.2.1 | Tomato | nucleus | 60.63 | 61.11 |
| PGSC0003DMT400000383 | Potato | nucleus | 61.02 | 60.78 |
| AT2G45650.1 | Thale cress | nucleus | 57.09 | 57.54 |
| CDY18911 | Canola | nucleus | 52.76 | 56.54 |
| CDY18912 | Canola | nucleus | 52.76 | 55.6 |
| Bra004927.1-P | Field mustard | nucleus | 52.36 | 54.96 |
| CDX74754 | Canola | nucleus | 53.94 | 53.52 |
| Os06t0162800-01 | Rice | nucleus | 46.46 | 52.44 |
| CDY53885 | Canola | nucleus | 52.36 | 51.75 |
| Bra000392.1-P | Field mustard | nucleus | 52.36 | 51.75 |
| Os03t0215400-01 | Rice | nucleus | 49.21 | 48.64 |
| Os09t0507200-01 | Rice | nucleus | 47.24 | 48.39 |
| Os08t0531700-01 | Rice | nucleus | 46.85 | 47.79 |
| AT3G61120.1 | Thale cress | nucleus | 44.88 | 46.72 |
| Os08t0431900-00 | Rice | nucleus | 28.74 | 45.91 |
| Os03t0753100-01 | Rice | nucleus | 41.73 | 44.35 |
| Bra014454.1-P | Field mustard | nucleus | 39.76 | 43.91 |
| CDX89097 | Canola | nucleus | 42.13 | 43.5 |
| Os03t0752800-02 | Rice | nucleus | 41.34 | 42.68 |
| Os06t0347700-00 | Rice | nucleus | 24.41 | 42.18 |
| Os07t0605200-01 | Rice | nucleus | 41.34 | 42.17 |
| Os07t0108900-02 | Rice | nucleus | 40.55 | 38.58 |
| Os02t0579600-00 | Rice | nucleus | 31.5 | 33.33 |
| Os12t0501700-00 | Rice | nucleus | 29.92 | 32.62 |
| Os01t0201700-02 | Rice | nucleus | 34.65 | 31.88 |
| Os05t0203800-02 | Rice | nucleus | 33.86 | 31.62 |
| Os12t0207000-01 | Rice | nucleus | 33.46 | 31.48 |
| Os01t0886200-01 | Rice | nucleus | 32.68 | 31.32 |
| Os02t0731200-01 | Rice | nucleus | 29.53 | 31.12 |
| Os04t0304400-01 | Rice | nucleus | 27.56 | 30.84 |
| CDY42485 | Canola | nucleus | 43.31 | 29.1 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4336762 | EMBL:AK070540 | ProteinID:BAF15563.1 | ProteinID:BAS90645.1 |
| ncoils:Coil | EMBL:FJ668596 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010093 | GO:GO:0045893 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os04g0580700 | EnsemblPlants:Os04t0580700-01 | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF189 | UniProt:Q0JAS4 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0000DD9225 | RefSeq:XP_015634419.1 | : | : | : |
Description
MADS BOX GENE 17MADS-box transcription factor, Regulation of floral organ identity and meristem fate (Os04t0580700-01)
Coordinates
chr4:+:29308352..29314056
Molecular Weight (calculated)
28804.3 Da
IEP (calculated)
8.975
GRAVY (calculated)
-0.765
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSEMGRGR VELKRIENKI NRQVTFSKRR NGLLKKAYEL SVLCDAEVAL IIFSSRGKLY EFGSAGINKT LEKYNSCCYN AQGSNSALAG GEHQSWYQEM
101: SRLKTKLECL QRSQRHMLGE DLGPLSIKEL QQLEKQLEYS LSQARQRKTQ IMMEQVDDLR RKERQLGELN KQLKNKLEAE ADSSNCRSAI QDSWVHGTVV
201: SGGRVLNAQP PPDIDCEPTL QIGYYQFVRP EAANPRSNGG GGDQNNNFVM GWPL
101: SRLKTKLECL QRSQRHMLGE DLGPLSIKEL QQLEKQLEYS LSQARQRKTQ IMMEQVDDLR RKERQLGELN KQLKNKLEAE ADSSNCRSAI QDSWVHGTVV
201: SGGRVLNAQP PPDIDCEPTL QIGYYQFVRP EAANPRSNGG GGDQNNNFVM GWPL
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Arabidopsis Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.