Factsheet for Os08t0494100-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0682200-01
Os03t0215400-01
Os03t0582400-01
Os04t0580700-01
Os06t0162800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	Os03t0215400-01	AT2G03710.1	15805477
AT1G77980.1	Os06t0162800-01	AT2G03710.1	15805477
AT1G77980.1	Os02t0682200-01	AT2G45650.1	15805477
AT1G77980.1	Os04t0580700-01	AT2G45650.1	15805477
AT1G77980.1	Os03t0582400-01	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G290700.1	Wheat	nucleus	36.8	80.52
TraesCS4D01G021100.1	Wheat	nucleus	72.7	69.41
HORVU4Hr1G003610.5	Barley	nucleus	62.02	68.52
TraesCS4B01G023300.1	Wheat	nucleus	62.02	67.86
VIT_19s0014g00310.t01	Wine grape	nucleus	13.95	60.26
GSMUA_Achr3P04450_001	Banana	nucleus	49.55	48.41
VIT_07s0031g01140.t01	Wine grape	nucleus	46.88	46.75
Os06t0223300-01	Rice	nucleus	49.26	46.11
AT1G77950.4	Thale cress	nucleus	33.83	45.24
Bra015645.1-P	Field mustard	nucleus	27.3	44.02
CDX87492	Canola	nucleus	29.38	43.23
CDX88401	Canola	nucleus	30.86	42.62
KRH18859	Soybean	nucleus	42.14	42.52
CDY01295	Canola	nucleus	37.69	40.84
AT1G77980.1	Thale cress	nucleus	40.06	40.66
KRH16660	Soybean	nucleus	41.54	40.35
CDY41491	Canola	nucleus	40.36	40.24
CDX88402	Canola	nucleus	39.17	40.12
Bra012308.1-P	Field mustard	nucleus	39.76	40.0
CDX87489	Canola	nucleus	38.87	39.82
Bra015643.1-P	Field mustard	nucleus	38.87	39.82
AT1G22130.1	Thale cress	nucleus	39.47	39.7
CDY00423	Canola	nucleus	39.17	39.4
CDX91664	Canola	nucleus	39.47	39.35
Bra016386.1-P	Field mustard	nucleus	35.31	38.26
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	47.48	25.16
Solyc05g051830.2.1	Tomato	nucleus	26.11	22.62
Os11t0658700-01	Rice	nucleus	24.93	21.43

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0P0XHJ8	ProteinID:BAT06045.1	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os08g0494100	EnsemblPlants:Os08t0494100-02	PFAM:PF00319	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0007060EF3	SEG:seg	:	:

Description

MADS BOX GENE 62MADS box transcription factor, Pollen maturation (Os08t0494100-01);MADS domain transcription factor, Pollen maturation (Os08t0494100-02)

Coordinates

chr8:-:24391703..24393904

Molecular Weight (calculated)

37004.7 Da

IEP (calculated)

4.658

GRAVY (calculated)

-0.382

Length

337 amino acids

Sequence
(BLAST)

001: MGRVKLPIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR RGVEDVILRY MNLSEHDRGE AIQNREYLIS MLQRLKRESD
101: MATQLANPGA LNEKEIQQEI YSSQQQLQIT EDRLRMFEPD PAAFGTSSEV DGCEKYLMEL LTRVVERKNN LLSSHMAPFD ATTAAMQGAD GTQMYVSQAD
201: GLATFGGDAA MWGPDGGADP GHPMFSASDP LIYLRDHDVY DANSQVAGGH AAAADAWRQA YTCTELLSTL IPTTPFPLMP HCLGPEDQYL SMEHGMVAAA
301: QEPVEASTAS CSYVPSDENS GTPVMAYDSN PPPANIA

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.