Factsheet for Os06t0223300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0682200-01
Os03t0215400-01
Os03t0582400-01
Os04t0580700-01
Os06t0162800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	Os03t0215400-01	AT2G03710.1	15805477
AT1G77980.1	Os06t0162800-01	AT2G03710.1	15805477
AT1G77980.1	Os02t0682200-01	AT2G45650.1	15805477
AT1G77980.1	Os04t0580700-01	AT2G45650.1	15805477
AT1G77980.1	Os03t0582400-01	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g00310.t01	Wine grape	nucleus	12.22	56.41
Zm00001d044850_P001	Maize	nucleus	43.33	56.12
KXG19627	Sorghum	nucleus	56.94	54.96
GSMUA_Achr3P04450_001	Banana	nucleus	49.72	51.88
Zm00001d037212_P001	Maize	nucleus	51.94	50.82
Os08t0494100-02	Rice	nucleus	46.11	49.26
VIT_07s0031g01140.t01	Wine grape	nucleus	43.61	46.45
AT1G77950.4	Thale cress	nucleus	32.22	46.03
Bra015645.1-P	Field mustard	nucleus	26.39	45.45
KRH18859	Soybean	nucleus	40.28	43.41
CDX87492	Canola	nucleus	27.5	43.23
CDY01295	Canola	nucleus	37.22	43.09
KRH16660	Soybean	nucleus	41.11	42.65
Bra015643.1-P	Field mustard	nucleus	38.89	42.55
CDX87489	Canola	nucleus	38.89	42.55
CDX88401	Canola	nucleus	28.61	42.21
Bra012308.1-P	Field mustard	nucleus	38.89	41.79
CDX88402	Canola	nucleus	38.06	41.64
AT1G22130.1	Thale cress	nucleus	38.61	41.49
CDY41491	Canola	nucleus	38.89	41.42
CDX91664	Canola	nucleus	38.89	41.42
CDY00423	Canola	nucleus	38.33	41.19
AT1G77980.1	Thale cress	nucleus	36.94	40.06
Bra016386.1-P	Field mustard	nucleus	34.44	39.87
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	49.17	27.83
Solyc05g051830.2.1	Tomato	nucleus	25.0	23.14
Os11t0658700-01	Rice	nucleus	23.89	21.94

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4340529	EMBL:AK111776	ProteinID:BAD38180.1	ProteinID:BAF19097.1
ProteinID:BAS96847.1	ncoils:Coil	ProteinID:EEE65359.1	EMBL:FN663130	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os06g0223300	EnsemblPlants:Os06t0223300-01	PFAM:PF00319	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	UniProt:Q67UI9	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00004264CA	RefSeq:XP_015641968.1	:

Description

MADS BOX GENE 63MADS box transcription factor, Pollen maturation (Os06t0223300-01)

Coordinates

chr6:+:6372353..6376374

Molecular Weight (calculated)

40070.3 Da

IEP (calculated)

4.397

GRAVY (calculated)

-0.448

Length

360 amino acids

Sequence
(BLAST)

001: MGRVKLQIKR IENIPNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR RRIEDVLTRY INLPESDRGG TIQNREYLIN MLTQLKCESD
101: VTEDLTNTSS KAPVNSNIEE LQQEIRRCQH QMQLTEEQLR MFEPDPARSA SMEDVEASEK FIAGILSRVE ERKRYLLCSM GSFDVTASTS AMQHLYLPQQ
201: HQHGDITDNG FGSDEVASWV SEGMPPTTSS VASIFAGTSD SMMSFRDQAV YDTMRQDACV DQTVVPEMGM CHVDQQNQSD DWQAYTSAEF LNALIPPTPF
301: PLDDEDTMGP MLASSPLLMP GIHDQQPPVE DMATAGCSQA PANDGNGLYA AEDIAPVNVG

Best Arabidopsis Sequence Match ( AT1G77980.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ

Arabidopsis Description

AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.