Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88402 | Canola | nucleus | 84.64 | 85.41 |
| Bra015643.1-P | Field mustard | nucleus | 83.73 | 84.5 |
| CDX87489 | Canola | nucleus | 83.73 | 84.5 |
| AT1G22130.1 | Thale cress | nucleus | 76.2 | 75.52 |
| TraesCS4A01G290700.1 | Wheat | nucleus | 29.52 | 63.64 |
| AT1G77950.4 | Thale cress | nucleus | 47.89 | 63.1 |
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 14.16 | 60.26 |
| KRH18859 | Soybean | nucleus | 53.61 | 53.29 |
| KRH16660 | Soybean | nucleus | 52.71 | 50.43 |
| Os08t0494100-02 | Rice | nucleus | 40.66 | 40.06 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 36.45 | 39.67 |
| Zm00001d044850_P001 | Maize | nucleus | 33.13 | 39.57 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 41.87 | 39.38 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 36.14 | 38.96 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 39.46 | 37.97 |
| Os06t0223300-01 | Rice | nucleus | 40.06 | 36.94 |
| Zm00001d037212_P001 | Maize | nucleus | 39.46 | 35.6 |
| KXG19627 | Sorghum | nucleus | 39.76 | 35.39 |
| AT2G26320.1 | Thale cress | nucleus | 11.14 | 33.95 |
| AT4G37435.1 | Thale cress | nucleus | 15.96 | 28.49 |
| Solyc05g051830.2.1 | Tomato | nucleus | 26.2 | 22.36 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 42.17 | 22.01 |
| AT1G69540.2 | Thale cress | nucleus | 23.49 | 21.25 |
| AT1G18750.3 | Thale cress | nucleus | 26.2 | 21.07 |
| AT2G03060.2 | Thale cress | nucleus | 23.19 | 19.95 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:844133 | EMBL:AB094111 | EMBL:AC009243 | ProteinID:AEE36053.1 |
| Symbol:AGL66 | ArrayExpress:AT1G77980 | EnsemblPlantsGene:AT1G77980 | RefSeq:AT1G77980 | TAIR:AT1G77980 | RefSeq:AT1G77980-TAIR-G |
| EnsemblPlants:AT1G77980.1 | TAIR:AT1G77980.1 | EMBL:AY141242 | Unigene:At.34354 | ncoils:Coil | EMBL:DQ446441 |
| EMBL:DQ652940 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009555 | GO:GO:0009653 | GO:GO:0009856 | GO:GO:0009987 |
| GO:GO:0010152 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0045944 |
| GO:GO:0046983 | GO:GO:0080092 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_177921.2 |
| PFAM:PF00319 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 | UniProt:Q1PFC2 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000034F556 | SEG:seg | : | : |
Description
AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
Coordinates
chr1:-:29314841..29317186
Molecular Weight (calculated)
38053.5 Da
IEP (calculated)
4.588
GRAVY (calculated)
-0.704
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.