CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93859
KRG93896
KRG93897
KRG93920
KRG93950
KRH12811
KRH18233
KRH37770
KRH42537
KRH42540
KRH44465
KRH47443
KRH48304
KRH58631
KRH65193
KRH68023
KRH70973
KRH75123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	KRH70973	AT2G03710.1	15805477
AT1G77980.1	KRH75123	AT2G03710.1	15805477
AT1G77980.1	KRH48304	AT2G45650.1	15805477
AT1G77980.1	KRH65193	AT2G45650.1	15805477
AT1G77980.1	KRH68023	AT5G06500.1	15805477
AT1G77980.1	KRG93859	AT5G58890.1	15805477
AT1G77980.1	KRG93896	AT5G58890.1	15805477
AT1G77980.1	KRG93897	AT5G58890.1	15805477
AT1G77980.1	KRG93920	AT5G58890.1	15805477
AT1G77980.1	KRG93950	AT5G58890.1	15805477
AT1G77980.1	KRH12811	AT5G58890.1	15805477
AT1G77980.1	KRH18233	AT5G58890.1	15805477
AT1G77980.1	KRH37770	AT5G58890.1	15805477
AT1G77980.1	KRH42537	AT5G58890.1	15805477
AT1G77980.1	KRH42540	AT5G58890.1	15805477
AT1G77980.1	KRH44465	AT5G58890.1	15805477
AT1G77980.1	KRH47443	AT5G58890.1	15805477
AT1G77980.1	KRH58631	AT5G58890.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16660	Soybean	nucleus	88.92	85.59
TraesCS4A01G290700.1	Wheat	nucleus	29.34	63.64
VIT_19s0014g00310.t01	Wine grape	nucleus	13.47	57.69
CDY41491	Canola	nucleus	55.99	55.33
CDX91664	Canola	nucleus	55.99	55.33
AT1G22130.1	Thale cress	nucleus	54.79	54.63
Bra012308.1-P	Field mustard	nucleus	54.49	54.33
CDY00423	Canola	nucleus	54.19	54.03
AT1G77980.1	Thale cress	nucleus	53.29	53.61
CDY01295	Canola	nucleus	49.4	53.05
Bra016386.1-P	Field mustard	nucleus	49.1	52.73
CDX88402	Canola	nucleus	51.8	52.58
CDX87489	Canola	nucleus	51.8	52.58
Bra015643.1-P	Field mustard	nucleus	51.8	52.58
Bra015645.1-P	Field mustard	nucleus	31.74	50.72
CDX87492	Canola	nucleus	34.73	50.66
CDX88401	Canola	nucleus	36.53	50.0
AT1G77950.4	Thale cress	nucleus	37.43	49.6
GSMUA_Achr3P04450_001	Banana	nucleus	47.01	45.51
Os08t0494100-02	Rice	nucleus	42.52	42.14
Zm00001d044850_P001	Maize	nucleus	35.03	42.09
TraesCS4D01G021100.1	Wheat	nucleus	43.11	40.79
TraesCS4B01G023300.1	Wheat	nucleus	37.43	40.58
HORVU4Hr1G003610.5	Barley	nucleus	36.83	40.33
Os06t0223300-01	Rice	nucleus	43.41	40.28
KXG19627	Sorghum	nucleus	44.91	40.21
Zm00001d037212_P001	Maize	nucleus	41.92	38.04
KRH61376	Soybean	nucleus	31.44	32.31
Solyc05g051830.2.1	Tomato	nucleus	29.34	25.19
KRH70750	Soybean	nucleus	16.77	24.78
GSMUA_Achr9P13010_001	Banana	cytosol, nucleus, plasma membrane	46.71	24.53
KRH56901	Soybean	nucleus	23.65	23.37
KRH50568	Soybean	nucleus	24.55	23.3
KRH03491	Soybean	nucleus	24.55	23.16
KRG89584	Soybean	nucleus	24.25	21.89
KRH74891	Soybean	endoplasmic reticulum, golgi, mitochondrion, vacuole	17.66	15.32

Protein Annotations

EntrezGene:100800846	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02008139	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G086400
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	UniProt:I1LW12	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH18859	ProteinID:KRH18859
ProteinID:KRH18859.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF154	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000294B913	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:19857225..19861992

Molecular Weight (calculated)

38130.1 Da

IEP (calculated)

5.959

GRAVY (calculated)

-0.688

Length

334 amino acids

Sequence
(BLAST)

001: MGRVKLEIKR IENPTNRQVT FSKRRNGLIK KAYELSILCD IDIAVIMFSP SGRVNHFSGR RRIEDVFTRY INLPDQVRDN AVSFPELPYR RGIQNKEYLL
101: RTLQQLRSEN DIALQLANPG DINSEIEELQ QEVNKLQQQL QMTEEQIRLY EPDPLKMSTM ADLENSEKYL VDVLTRVIQR KEYLLSNHLS SYDPSGIQGI
201: PTSFENVGWL QDGNQNHTQI FDASAPLDPL RDLSSTVYGS FSQGTSSNAN PRIMGECHVS NPSDGNLQAW PLGYTLYPHH HIQHGMVGPD MTDMMPNGQV
301: NIPITPSHVE QPKNESVEYD QSKQPPPHHQ LNAQ

Best Arabidopsis Sequence Match ( AT1G22130.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

Arabidopsis Description

AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.