CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44465	Soybean	nucleus	55.32	23.21
KRH18233	Soybean	nucleus	68.09	21.33
KRG93950	Soybean	nucleus	62.77	19.93
KRG93859	Soybean	mitochondrion	65.96	17.42
KRH47443	Soybean	nucleus	58.51	15.58
KRG93897	Soybean	mitochondrion	58.51	15.58
KRG93920	Soybean	mitochondrion	42.55	13.33
KRH37770	Soybean	cytosol	25.53	12.7
VIT_15s0021g02220.t01	Wine grape	nucleus	36.17	11.37
KRH42537	Soybean	nucleus	31.91	10.99
Bra028965.1-P	Field mustard	mitochondrion, nucleus	30.85	10.58
CDY11987	Canola	mitochondrion, nucleus	30.85	10.58
CDY36759	Canola	mitochondrion, nucleus	30.85	10.58
AT5G58890.1	Thale cress	nucleus	32.98	10.54
VIT_15s0021g02250.t01	Wine grape	nucleus	35.11	10.48
AT5G55690.1	Thale cress	nucleus	29.79	10.11
KRH58631	Soybean	nucleus	32.98	9.9
KRH42540	Soybean	nucleus	31.91	9.87
CDY54181	Canola	nucleus	29.79	9.3
KRH12811	Soybean	cytosol	37.23	9.07
Solyc01g103550.1.1	Tomato	nucleus	29.79	9.0
PGSC0003DMT400064120	Potato	nucleus	29.79	8.75
CDX80329	Canola	nucleus	27.66	8.64
PGSC0003DMT400071682	Potato	nucleus	26.6	8.36
Bra002611.1-P	Field mustard	nucleus	4.26	1.35

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02011641	EnsemblPlantsGene:GLYMA_19G047500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K7MWL1
EnsemblPlants:KRG93896	ProteinID:KRG93896	ProteinID:KRG93896.1	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000294C373
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:7452176..7452460

Molecular Weight (calculated)

10735.1 Da

IEP (calculated)

10.118

GRAVY (calculated)

-0.504

Length

94 amino acids

Sequence
(BLAST)

1: MGHARITLKH ISKERSHKTT LMLRKKGLIK KIFEFSTMCG VEACLIVYDN GNNGDVAPLT CPRDPTVVHS ILQKYESKKN NEKSHKNFGI QDFF

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.