Factsheet for PGSC0003DMT400064120

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103550.1.1	Tomato	nucleus	61.25	63.02
KRG93896	Soybean	nucleus	8.75	29.79
KRH42537	Soybean	nucleus	22.19	26.01
PGSC0003DMT400071682	Potato	nucleus	24.06	25.75
KRH58631	Soybean	nucleus	25.0	25.56
VIT_15s0021g02220.t01	Wine grape	nucleus	23.75	25.42
VIT_15s0021g02250.t01	Wine grape	nucleus	24.06	24.44
KRH42540	Soybean	nucleus	22.5	23.68
KRH44465	Soybean	nucleus	15.0	21.43
PGSC0003DMT400085676	Potato	nucleus	14.69	20.61
KRG93950	Soybean	nucleus	17.81	19.26
KRH37770	Soybean	cytosol	9.69	16.4
KRH18233	Soybean	nucleus	15.31	16.33
PGSC0003DMT400071001	Potato	nucleus	19.38	15.98
KRG93859	Soybean	mitochondrion	17.19	15.45
KRH47443	Soybean	nucleus	16.56	15.01
KRG93897	Soybean	mitochondrion	15.62	14.16
KRG93920	Soybean	mitochondrion	12.19	13.0
PGSC0003DMT400023977	Potato	nucleus	14.06	12.75
KRH12811	Soybean	cytosol	15.0	12.44

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:M1CBS4	InterPro:MADS_SRF-like	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400024916
PGSC:PGSC0003DMG400024916	EnsemblPlants:PGSC0003DMT400064120	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002968AC3	SEG:seg

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024916]

Coordinates

chr1:-:80241931..80242893

Molecular Weight (calculated)

37215.7 Da

IEP (calculated)

7.866

GRAVY (calculated)

-0.800

Length

320 amino acids

Sequence
(BLAST)

001: MGRAKLKMEL ITKEKSRNAT FKKRKEGLLK KLYEFTTLCN VNGLMIMYGP KQGNGSDSSP EIWTNSSGST TTTTTKSLQQ QQQEIENLID EYKKENSLQS
101: GSTKTFGLSD YFVDRNKKVE EEFIKLRKMN MEKKYPCWLE FMDQLSEFKL RDFLTLLDDK VENVKTRINM LKGNFTDLME GEMIGLGGGE QATRLTHYND
201: NVMVQGGMEY GDYNQLQAPI YPYCNSFVNH HQEMRMLMMN ENDWQYNNGA SSSGSNNMRC ALMKYETMMT HNMMGSNNQL TYVAPTILQP TPCMMMPQMQ
301: HSWIENERDD KTKFSPYMRK

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.