CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18233	Soybean	nucleus	52.33	52.33
KRG93896	Soybean	nucleus	13.33	42.55
KRH44465	Soybean	nucleus	25.67	34.38
KRG93859	Soybean	mitochondrion	37.33	31.46
KRG93897	Soybean	mitochondrion	35.67	30.31
KRG93950	Soybean	nucleus	26.0	26.35
KRH47443	Soybean	nucleus	28.0	23.8
KRH42540	Soybean	nucleus	18.33	18.09
KRH37770	Soybean	cytosol	11.33	17.99
KRH42537	Soybean	nucleus	16.33	17.95
KRH58631	Soybean	nucleus	18.0	17.25
KRH12811	Soybean	cytosol	21.33	16.58
VIT_15s0021g02220.t01	Wine grape	nucleus	15.33	15.38
VIT_15s0021g02250.t01	Wine grape	nucleus	14.67	13.97
PGSC0003DMT400071682	Potato	nucleus	13.0	13.04
AT5G55690.1	Thale cress	nucleus	12.0	13.0
AT5G58890.1	Thale cress	nucleus	12.33	12.59
PGSC0003DMT400064120	Potato	nucleus	13.0	12.19
Solyc01g103550.1.1	Tomato	nucleus	12.33	11.9
CDY36759	Canola	mitochondrion, nucleus	10.67	11.68
CDY11987	Canola	mitochondrion, nucleus	10.67	11.68
Bra028965.1-P	Field mustard	mitochondrion, nucleus	10.67	11.68
CDY54181	Canola	nucleus	11.33	11.3
CDX80329	Canola	nucleus	11.0	10.96
Bra002611.1-P	Field mustard	nucleus	6.33	6.4

Protein Annotations

MapMan:15.5.14	UniProt:A0A0R0EIU7	EMBL:ACUP02011651	EnsemblPlantsGene:GLYMA_19G049600	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRG93920
ProteinID:KRG93920	ProteinID:KRG93920.1	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0006ED818C	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:7900223..7901294

Molecular Weight (calculated)

34511.6 Da

IEP (calculated)

5.402

GRAVY (calculated)

-0.655

Length

300 amino acids

Sequence
(BLAST)

001: MGRARITLKH ISNERSRKKT FMQRRKVLVK KALNFPPYPA LAHSILQKYE SQKNERPLSI QDFVEDRKSI VEAKISKVHK EITNIKYPTW NPSFRNMEEE
101: QLRAFIALVD AKIRACDHTL KNMHQSEGNF MQNMAWGNAS FSHSTPMEPL NNNGNVVQES ANCLQNISQS QPIHEEALKT LNVENEMVGF SNRVDVPLDN
201: PNQLGDLLDW FDGPIDWYDH LGWTSQPNEF ILLQNIEVQS QNEQQGGAAL KTLNVENEMV GFSNRDYVPL DTTNPFGDFL DWFDGPIDDC SDLVCWTSQR

Best Arabidopsis Sequence Match ( AT3G57230.2 )
(BLAST)

001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KVLML

Arabidopsis Description

AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.