Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028965.1-P | Field mustard | mitochondrion, nucleus | 67.87 | 68.61 |
| CDY11987 | Canola | mitochondrion, nucleus | 67.51 | 68.25 |
| CDY36759 | Canola | mitochondrion, nucleus | 67.51 | 68.25 |
| KRG93896 | Soybean | nucleus | 10.11 | 29.79 |
| AT5G58890.1 | Thale cress | nucleus | 30.32 | 28.57 |
| KRH42537 | Soybean | nucleus | 24.55 | 24.91 |
| PGSC0003DMT400085676 | Potato | nucleus | 17.69 | 21.49 |
| KRH58631 | Soybean | nucleus | 23.83 | 21.09 |
| KRH44465 | Soybean | nucleus | 16.97 | 20.98 |
| KRH42540 | Soybean | nucleus | 22.74 | 20.72 |
| VIT_15s0021g02250.t01 | Wine grape | nucleus | 20.22 | 17.78 |
| VIT_15s0021g02220.t01 | Wine grape | nucleus | 19.13 | 17.73 |
| KRH18233 | Soybean | nucleus | 18.77 | 17.33 |
| KRG93950 | Soybean | nucleus | 18.41 | 17.23 |
| Solyc11g020320.1.1 | Tomato | nucleus | 16.25 | 16.36 |
| KRG93859 | Soybean | mitochondrion | 19.86 | 15.45 |
| PGSC0003DMT400071001 | Potato | nucleus | 21.3 | 15.21 |
| Solyc11g020620.1.1 | Tomato | nucleus | 18.77 | 15.2 |
| KRH47443 | Soybean | nucleus | 19.13 | 15.01 |
| Solyc11g020660.1.1 | Tomato | nucleus | 16.61 | 14.74 |
| KRG93897 | Soybean | mitochondrion | 18.41 | 14.45 |
| KRH37770 | Soybean | cytosol | 9.39 | 13.76 |
| KRG93920 | Soybean | mitochondrion | 13.0 | 12.0 |
| KRH12811 | Soybean | cytosol | 16.25 | 11.66 |
| PGSC0003DMT400023977 | Potato | nucleus | 14.08 | 11.05 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:835663 | ProteinID:AED96668.1 | ProteinID:ANM69251.1 | ArrayExpress:AT5G55690 |
| EnsemblPlantsGene:AT5G55690 | RefSeq:AT5G55690 | TAIR:AT5G55690 | RefSeq:AT5G55690-TAIR-G | EnsemblPlants:AT5G55690.1 | TAIR:AT5G55690.1 |
| EMBL:AY141214 | ProteinID:BAB09236.1 | EMBL:BT026042 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_001318803.1 | RefSeq:NP_200380.1 |
| PFAM:PF00319 | PO:PO:0020090 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF176 |
| UniProt:Q9FM69 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A08F0 |
Description
At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
Coordinates
chr5:-:22548707..22550094
Molecular Weight (calculated)
31701.6 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.596
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.