Factsheet for AT5G58890.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54181	Canola	nucleus	53.06	51.83
CDX80329	Canola	nucleus	51.36	50.17
KRG93896	Soybean	nucleus	10.54	32.98
AT5G55690.1	Thale cress	nucleus	28.57	30.32
Bra002611.1-P	Field mustard	nucleus	30.27	29.97
KRH44465	Soybean	nucleus	15.65	20.54
VIT_15s0021g02220.t01	Wine grape	nucleus	20.07	19.73
KRH42540	Soybean	nucleus	20.07	19.41
PGSC0003DMT400085676	Potato	nucleus	14.63	18.86
VIT_15s0021g02250.t01	Wine grape	nucleus	20.07	18.73
KRH58631	Soybean	nucleus	19.73	18.53
KRH42537	Soybean	nucleus	17.01	18.32
KRG93950	Soybean	nucleus	17.69	17.57
KRH37770	Soybean	cytosol	11.22	17.46
KRH18233	Soybean	nucleus	17.01	16.67
Solyc11g020320.1.1	Tomato	nucleus	14.29	15.27
Solyc11g020660.1.1	Tomato	nucleus	15.65	14.74
KRG93859	Soybean	mitochondrion	17.01	14.04
KRH47443	Soybean	nucleus	16.67	13.88
Solyc11g020620.1.1	Tomato	nucleus	15.65	13.45
KRG93897	Soybean	mitochondrion	15.31	12.75
KRH12811	Soybean	cytosol	16.33	12.44
PGSC0003DMT400071001	Potato	nucleus	16.33	12.37
KRG93920	Soybean	mitochondrion	12.59	12.33
PGSC0003DMT400023977	Potato	nucleus	9.86	8.22

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:836006	UniProt:A0A178URD6	ProteinID:AED97114.1	Symbol:AGL82
ArrayExpress:AT5G58890	EnsemblPlantsGene:AT5G58890	RefSeq:AT5G58890	TAIR:AT5G58890	RefSeq:AT5G58890-TAIR-G	EnsemblPlants:AT5G58890.1
TAIR:AT5G58890.1	Unigene:At.55618	ProteinID:BAB09634.1	ProteinID:BAH30636.1	GO:GO:0000982	GO:GO:0000987
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_SRF-like	RefSeq:NP_200697.1	ProteinID:OAO96378.1
PFAM:PF00319	PO:PO:0000037	PO:PO:0000084	PO:PO:0001081	PO:PO:0001185	PO:PO:0007064
PO:PO:0007103	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009030	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020038	PO:PO:0020090	PO:PO:0020100	PO:PO:0025022	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	UniProt:Q9FIM0	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A2ED2	SEG:seg	:	:

Description

AGL82Agamous-like MADS-box protein AGL82 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIM0]

Coordinates

chr5:+:23780832..23781716

Molecular Weight (calculated)

34167.7 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.756

Length

294 amino acids

Sequence
(BLAST)

001: MVPKVVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VETCLIVYGP TKATDVVISE PEIWPKDETK VRAIIRKYKD TVSTSCRKET NVETFVNDVG
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.