Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0014g00310.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58890.1 | VIT_19s0014g00310.t01 | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0021g02250.t01 | Wine grape | nucleus | 84.28 | 80.0 |
| KRG93896 | Soybean | nucleus | 11.37 | 36.17 |
| KRH42537 | Soybean | nucleus | 25.75 | 28.21 |
| KRH58631 | Soybean | nucleus | 28.09 | 26.84 |
| KRH44465 | Soybean | nucleus | 20.07 | 26.79 |
| PGSC0003DMT400071682 | Potato | nucleus | 25.42 | 25.42 |
| PGSC0003DMT400064120 | Potato | nucleus | 25.42 | 23.75 |
| Solyc01g103550.1.1 | Tomato | nucleus | 24.41 | 23.47 |
| KRH42540 | Soybean | nucleus | 23.75 | 23.36 |
| CDX80329 | Canola | nucleus | 21.4 | 21.26 |
| KRH18233 | Soybean | nucleus | 20.74 | 20.67 |
| CDY54181 | Canola | nucleus | 20.74 | 20.6 |
| AT5G58890.1 | Thale cress | nucleus | 19.73 | 20.07 |
| AT5G55690.1 | Thale cress | nucleus | 17.73 | 19.13 |
| CDY36759 | Canola | mitochondrion, nucleus | 17.06 | 18.61 |
| CDY11987 | Canola | mitochondrion, nucleus | 17.06 | 18.61 |
| Bra028965.1-P | Field mustard | mitochondrion, nucleus | 17.06 | 18.61 |
| KRH47443 | Soybean | nucleus | 21.74 | 18.41 |
| KRG93950 | Soybean | nucleus | 17.39 | 17.57 |
| KRH37770 | Soybean | cytosol | 11.04 | 17.46 |
| KRG93859 | Soybean | mitochondrion | 20.4 | 17.13 |
| KRG93920 | Soybean | mitochondrion | 15.38 | 15.33 |
| KRG93897 | Soybean | mitochondrion | 18.06 | 15.3 |
| KRH12811 | Soybean | cytosol | 19.4 | 15.03 |
| Bra002611.1-P | Field mustard | nucleus | 12.04 | 12.12 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:CCB43860 | ProteinID:CCB43860.1 | UniProt:F6GV77 | EMBL:FN594952 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF176 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00015C9B7A | ArrayExpress:VIT_15s0021g02220 | EnsemblPlantsGene:VIT_15s0021g02220 |
| EnsemblPlants:VIT_15s0021g02220.t01 | unigene:Vvi.6406 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr15:-:13159995..13160979
Molecular Weight (calculated)
33919.9 Da
IEP (calculated)
8.400
GRAVY (calculated)
-0.553
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSRLPLEL IPKEKSRKIT FQKRTMGLKK KTYEISTLCG VDACVIIYSW TSDDRPMEPI FWPSNPEEVK SIINRYKEHS KEERGLKTLD LSGFFEERIK
101: KIQKDISKLG HQGADQTKYS TWDDRLNDLS VDQLREFVNA LGTKLEVIKS RVELLKMSQT LLEGPALENP SYPNNAMPST QSLHVPYLGM IDSMSLVPNP
201: MTPMMNPRMT KVMMTSDNTN SSQFSGPSNG TNNTQYTPPL QHPFYYDPTS GLLENIVSSN PGPSSCYYPP AMLPPILPYI PNQMMMNVPQ IARDYTPIA
101: KIQKDISKLG HQGADQTKYS TWDDRLNDLS VDQLREFVNA LGTKLEVIKS RVELLKMSQT LLEGPALENP SYPNNAMPST QSLHVPYLGM IDSMSLVPNP
201: MTPMMNPRMT KVMMTSDNTN SSQFSGPSNG TNNTQYTPPL QHPFYYDPTS GLLENIVSSN PGPSSCYYPP AMLPPILPYI PNQMMMNVPQ IARDYTPIA
001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
Arabidopsis Description
At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.