Factsheet for Solyc01g103550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064120	Potato	nucleus	63.02	61.25
KRG93896	Soybean	nucleus	9.0	29.79
KRH42537	Soybean	nucleus	22.19	25.27
VIT_15s0021g02220.t01	Wine grape	nucleus	23.47	24.41
KRH58631	Soybean	nucleus	24.12	23.96
VIT_15s0021g02250.t01	Wine grape	nucleus	24.12	23.81
KRH42540	Soybean	nucleus	22.83	23.36
KRH44465	Soybean	nucleus	15.76	21.88
Solyc11g020320.1.1	Tomato	nucleus	18.33	20.73
Solyc11g020620.1.1	Tomato	nucleus	20.9	19.01
KRG93950	Soybean	nucleus	16.72	17.57
Solyc11g020660.1.1	Tomato	nucleus	17.04	16.99
KRH18233	Soybean	nucleus	15.76	16.33
KRH47443	Soybean	nucleus	17.68	15.58
KRH37770	Soybean	cytosol	9.32	15.34
KRG93859	Soybean	mitochondrion	16.4	14.33
KRG93897	Soybean	mitochondrion	16.08	14.16
KRG93920	Soybean	mitochondrion	11.9	12.33
KRH12811	Soybean	cytosol	13.5	10.88

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:K4B1T0	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc01g103550.1
EnsemblPlants:Solyc01g103550.1.1	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002768404	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:92133625..92134560

Molecular Weight (calculated)

35841.8 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.805

Length

311 amino acids

Sequence
(BLAST)

001: MGRAKLKMEL ISKEKSRNAT FKKRKEGLLK KLYEFTTLCN VNGLMIMYGP KQGNGSECRP EIWTNSSGSS SSTNSKSLQQ QQEEIENLID EYKKENSLQS
101: GSSKTFGLSD YFVDRNKRVE EEFIKLRKMN MEKKYPCWLE FMDQLSEFKL RDFLTLLDDR VENVKARIHL LKGNFSGLMG GEMIDLGGGN QWTHYNDNVM
201: VQGGGMEYGD YNQLQAPIYH QEMRMVMMNE NDWPQYNNGA SSSSSAGNGS NNMMCALMKY ETMMPSNNHL AYSPYVAPTI LQQTPCMMMP QHSWRDNDRD
301: DKAKFSPYMT K

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.