Factsheet for Solyc11g020660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g051830.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	Solyc05g051830.2.1	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g020620.1.1	Tomato	nucleus	57.69	52.63
Solyc11g020320.1.1	Tomato	nucleus	34.62	39.27
Solyc01g103550.1.1	Tomato	nucleus	16.99	17.04
AT5G55690.1	Thale cress	nucleus	14.74	16.61
AT5G58890.1	Thale cress	nucleus	14.74	15.65
CDY54181	Canola	nucleus	14.42	14.95
CDX80329	Canola	nucleus	14.1	14.62
Bra028965.1-P	Field mustard	mitochondrion, nucleus	11.86	13.5
CDY11987	Canola	mitochondrion, nucleus	11.86	13.5
CDY36759	Canola	mitochondrion, nucleus	11.86	13.5
Bra002611.1-P	Field mustard	nucleus	8.65	9.09

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K4D718	PFAM:PF00319	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc11g020660.1	EnsemblPlants:Solyc11g020660.1.1
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002769517	:	:	:

Description

No Description!

Coordinates

chr11:-:11809414..11810352

Molecular Weight (calculated)

35560.6 Da

IEP (calculated)

4.607

GRAVY (calculated)

-0.721

Length

312 amino acids

Sequence
(BLAST)

001: MNTSVKRKAS LVKKISELSI LCDIKACMII YDEGNSNCEM WPNEVKELIN VYKDQPFEGR TKRGKTLSNY FKDEIKVEKD LDSRFDYFEN DEKKKADAIN
101: VEKYPTWDSR FDYLSQKEIQ NLVGVISKRM ENAKGRIELL KSMNGSCSLS HRQQIWDYNN LMNQTSPWPI SDHVNSFNNF FQSNIGVNSM MESENWLAND
201: EIGSSLAMHP MGNNYGIIDS STTMMQPMGN NEIGSSSTMQ QPMFQYPFMY NGSTHVIGSS STMQPPMGQY PFTNNDDSTG DIGSSSMQPI GNNNEIGPMD
301: NDSTYDSCTF YY

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.