Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54181 | Canola | nucleus | 83.39 | 83.39 |
| AT5G58890.1 | Thale cress | nucleus | 50.17 | 51.36 |
| CDY11987 | Canola | mitochondrion, nucleus | 28.9 | 31.75 |
| CDY36759 | Canola | mitochondrion, nucleus | 28.9 | 31.75 |
| KRG93896 | Soybean | nucleus | 8.64 | 27.66 |
| VIT_15s0021g02220.t01 | Wine grape | nucleus | 21.26 | 21.4 |
| KRH42540 | Soybean | nucleus | 20.93 | 20.72 |
| VIT_15s0021g02250.t01 | Wine grape | nucleus | 21.26 | 20.32 |
| KRH58631 | Soybean | nucleus | 20.27 | 19.49 |
| KRH44465 | Soybean | nucleus | 13.95 | 18.75 |
| KRH42537 | Soybean | nucleus | 16.94 | 18.68 |
| KRG93950 | Soybean | nucleus | 15.95 | 16.22 |
| KRH18233 | Soybean | nucleus | 15.95 | 16.0 |
| Solyc11g020320.1.1 | Tomato | nucleus | 14.29 | 15.64 |
| PGSC0003DMT400085676 | Potato | nucleus | 11.63 | 15.35 |
| Solyc11g020660.1.1 | Tomato | nucleus | 14.62 | 14.1 |
| KRH37770 | Soybean | cytosol | 8.64 | 13.76 |
| Solyc11g020620.1.1 | Tomato | nucleus | 15.61 | 13.74 |
| KRG93859 | Soybean | mitochondrion | 14.62 | 12.36 |
| PGSC0003DMT400071001 | Potato | nucleus | 15.61 | 12.11 |
| KRH47443 | Soybean | nucleus | 13.95 | 11.9 |
| KRG93897 | Soybean | mitochondrion | 13.95 | 11.9 |
| KRG93920 | Soybean | mitochondrion | 10.96 | 11.0 |
| KRH12811 | Soybean | cytosol | 13.29 | 10.36 |
| PGSC0003DMT400023977 | Potato | nucleus | 7.97 | 6.8 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078CWB3 | EnsemblPlants:CDX80329 | ProteinID:CDX80329 | ProteinID:CDX80329.1 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00133354001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF176 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDF197 | SEG:seg |
Description
BnaC09g34130D
Coordinates
chrLK031820:-:1682810..1683715
Molecular Weight (calculated)
35064.8 Da
IEP (calculated)
8.530
GRAVY (calculated)
-0.828
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVQKMAHEK VVDLQRITND KTRMTTYKKR RACLYKKAGE FSTLCGVQTC IILYGPTKAT DEVISKPEIW PEDETKARDI IRRYRDTVSN SCRKEAHVET
101: FVNDKGKAKE TENTNNNNKR GMNNKNKYCC WEERLEKCSQ EQLRGIFDDV GNKLHEAIMR QNRNAITAQH QVMEPQTPQN LMDPYYVSQY FAGHQQQQCL
201: MFPYNNMSFP LFSPHDDQIP MEPILVENFA DSGVNQGFMM SKGNESTQFM QRQAPYYIEP VVQRPASFNV NPFTGYQVPY NIPRLPGNQA EVWDFMAKKP
301: I
101: FVNDKGKAKE TENTNNNNKR GMNNKNKYCC WEERLEKCSQ EQLRGIFDDV GNKLHEAIMR QNRNAITAQH QVMEPQTPQN LMDPYYVSQY FAGHQQQQCL
201: MFPYNNMSFP LFSPHDDQIP MEPILVENFA DSGVNQGFMM SKGNESTQFM QRQAPYYIEP VVQRPASFNV NPFTGYQVPY NIPRLPGNQA EVWDFMAKKP
301: I
001: MVPKVVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VETCLIVYGP TKATDVVISE PEIWPKDETK VRAIIRKYKD TVSTSCRKET NVETFVNDVG
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI
Arabidopsis Description
AGL82Agamous-like MADS-box protein AGL82 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIM0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.