Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80577 | Canola | mitochondrion, nucleus | 92.75 | 85.05 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 98.91 | 75.0 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 7.61 | 51.22 |
| CDY71896 | Canola | nucleus | 26.09 | 41.86 |
| CDY71564 | Canola | nucleus | 44.57 | 36.28 |
| CDY70782 | Canola | nucleus | 41.3 | 35.29 |
| CDY05333 | Canola | nucleus | 45.29 | 33.16 |
| CDX88234 | Canola | nucleus | 21.74 | 32.79 |
| CDY67043 | Canola | nucleus | 46.38 | 32.74 |
| AT5G27960.1 | Thale cress | nucleus | 36.96 | 31.88 |
| CDY05515 | Canola | nucleus | 43.48 | 31.83 |
| AT1G65300.1 | Thale cress | nucleus | 31.88 | 31.65 |
| AT1G31630.1 | Thale cress | mitochondrion | 37.32 | 30.38 |
| AT5G26650.1 | Thale cress | nucleus | 39.13 | 29.51 |
| AT5G26580.1 | Thale cress | nucleus | 36.59 | 29.28 |
| CDX80580 | Canola | nucleus | 21.38 | 29.21 |
| CDY33537 | Canola | nucleus | 20.65 | 29.08 |
| AT1G65330.1 | Thale cress | nucleus | 29.35 | 29.03 |
| AT1G59930.1 | Thale cress | cytosol | 13.77 | 28.79 |
| PGSC0003DMT400003073 | Potato | cytosol | 11.23 | 28.7 |
| CDY64992 | Canola | mitochondrion, nucleus | 15.94 | 28.57 |
| CDY25744 | Canola | mitochondrion | 16.67 | 28.4 |
| CDY05514 | Canola | nucleus | 36.96 | 28.33 |
| AT5G35120.1 | Thale cress | cytosol | 10.87 | 28.04 |
| CDY05540 | Canola | nucleus | 21.74 | 27.78 |
| CDY25000 | Canola | nucleus | 21.74 | 27.78 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 8.33 | 27.06 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 21.38 | 26.7 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 18.12 | 26.32 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 14.86 | 26.28 |
| CDY04801 | Canola | mitochondrion, nucleus | 15.22 | 25.93 |
| CDY21372 | Canola | mitochondrion | 15.22 | 25.93 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 18.12 | 25.64 |
| KXG28892 | Sorghum | nucleus | 17.03 | 25.41 |
| OQU83806 | Sorghum | nucleus | 15.94 | 25.14 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 17.75 | 24.62 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 20.29 | 24.14 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 20.29 | 24.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.29 | 24.03 |
| KXG28893 | Sorghum | nucleus | 14.49 | 23.81 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 14.13 | 23.78 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 19.57 | 23.48 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 20.65 | 23.27 |
| CDY05207 | Canola | nucleus | 27.9 | 23.05 |
| CDY27735 | Canola | nucleus | 22.1 | 22.85 |
| EES10067 | Sorghum | mitochondrion | 16.67 | 22.33 |
| KXG32310 | Sorghum | nucleus | 19.57 | 22.31 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 14.86 | 22.28 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 14.86 | 22.16 |
| Os03t0582400-01 | Rice | nucleus | 19.93 | 22.09 |
| CDX97329 | Canola | nucleus | 23.19 | 22.07 |
| AT1G31640.1 | Thale cress | mitochondrion | 36.96 | 21.98 |
| Zm00001d048894_P001 | Maize | mitochondrion | 19.57 | 21.86 |
| CDY27734 | Canola | nucleus | 26.45 | 21.73 |
| OQU83804 | Sorghum | mitochondrion | 18.48 | 21.7 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 14.49 | 21.62 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 18.12 | 21.37 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 18.12 | 21.37 |
| TraesCS7D01G548500.1 | Wheat | plastid | 18.12 | 21.28 |
| EES06917 | Sorghum | mitochondrion, nucleus | 19.93 | 21.24 |
| KXG28889 | Sorghum | nucleus | 19.2 | 21.2 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 19.2 | 21.12 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 14.13 | 21.08 |
| CDY60402 | Canola | nucleus | 23.19 | 21.05 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 14.13 | 20.74 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 17.03 | 20.7 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 20.65 | 20.5 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 14.13 | 20.42 |
| KXG28888 | Sorghum | nucleus | 18.84 | 20.39 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 18.48 | 20.32 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 16.67 | 20.26 |
| KXG28890 | Sorghum | mitochondrion | 18.48 | 20.0 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 17.75 | 20.0 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 17.75 | 20.0 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 15.22 | 19.91 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 18.12 | 19.16 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 18.12 | 19.16 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 18.12 | 19.16 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 15.58 | 18.94 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 13.04 | 18.85 |
| CDY38696 | Canola | nucleus | 18.84 | 18.7 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 16.3 | 18.67 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 15.94 | 18.64 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 15.22 | 18.5 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 17.39 | 18.46 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 15.22 | 18.34 |
| Zm00001d016791_P001 | Maize | mitochondrion | 18.84 | 18.12 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 13.41 | 18.05 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 13.77 | 18.01 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 15.58 | 17.84 |
| KXG38099 | Sorghum | plastid | 20.29 | 17.78 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 15.94 | 17.74 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 15.22 | 17.43 |
| EER91288 | Sorghum | mitochondrion, nucleus | 19.57 | 17.2 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 14.49 | 16.95 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 12.68 | 16.51 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 14.13 | 16.18 |
| CDY18830 | Canola | nucleus | 19.93 | 15.99 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 13.41 | 15.35 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 9.06 | 15.34 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 16.67 | 14.98 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 12.32 | 14.98 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 15.58 | 13.74 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 14.86 | 13.1 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 16.67 | 12.92 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 14.86 | 12.73 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 16.3 | 12.4 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 14.49 | 12.38 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 13.77 | 12.3 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 14.13 | 12.07 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 12.68 | 11.29 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 11.96 | 9.94 |
| PGSC0003DMT400089615 | Potato | cytosol | 5.8 | 6.72 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DG33 | EnsemblPlants:CDX88231 | ProteinID:CDX88231 | ProteinID:CDX88231.1 |
| ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00147709001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF355 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF43FD |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g28220D
Coordinates
chrLK031854:+:1552700..1553794
Molecular Weight (calculated)
31895.2 Da
IEP (calculated)
6.317
GRAVY (calculated)
-0.646
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRSRVKLSL IPDKTSRRTT FKKRKGGIMK KLHELVTLCG VEACAVVYNG AEEVISKFMG FPRVEREKKM YDQERYTGER IMKEEATLER VKDENRELEL
101: KEIMFDLLKG KRMMEHHSSD ARAVNELCEF IDYNVSEITK RIHMLQANGG TVSYPPLDVA LFHNQVPTNF SGHVPYQNMM NYQEPVQYQV PDNGMGLDMN
201: HNLSESFSQY PNLHDQPYLN QLMAQTQQMS YAEELASLAA MDNNNYQLPS TSYMPSMELS ALNTNNNPWP TRFGLE
101: KEIMFDLLKG KRMMEHHSSD ARAVNELCEF IDYNVSEITK RIHMLQANGG TVSYPPLDVA LFHNQVPTNF SGHVPYQNMM NYQEPVQYQV PDNGMGLDMN
201: HNLSESFSQY PNLHDQPYLN QLMAQTQQMS YAEELASLAA MDNNNYQLPS TSYMPSMELS ALNTNNNPWP TRFGLE
001: MRSKIKLSLI ANKTSRRTTF RKRKGGITNK LHELTTLCGV KACAVISSPY ENPVVWPSTE GVQEAVSMFM ERPATEQSKL MMSHETYLQD KITKETKKLE
101: SLRRENRESQ LRQFMFDCVE GKMSEHQYGA RDLQDLSLYI DHYINQLNSS VMLLTNNGAS SSSFPPPLHT SVAGAGAGAG AAPLVVAGAG AAPLAVAGAG
201: ASPLAVAGVG AAPLAVAGAG PPMAQNQYEP IQPYIPTAFS DNIQYQAPVD FNHQIQHGIY DNLSLDPNHQ YPFQDDPFME MLMEYPYEQV GYAAEHAHIP
301: FMNGNYYNYH QPPTVGLTTT GHMPSNNATT TTTTNTTVV
101: SLRRENRESQ LRQFMFDCVE GKMSEHQYGA RDLQDLSLYI DHYINQLNSS VMLLTNNGAS SSSFPPPLHT SVAGAGAGAG AAPLVVAGAG AAPLAVAGAG
201: ASPLAVAGVG AAPLAVAGAG PPMAQNQYEP IQPYIPTAFS DNIQYQAPVD FNHQIQHGIY DNLSLDPNHQ YPFQDDPFME MLMEYPYEQV GYAAEHAHIP
301: FMNGNYYNYH QPPTVGLTTT GHMPSNNATT TTTTNTTVV
Arabidopsis Description
AGL86Agamous-like MADS-box protein AGL86 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6V3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.