Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020247.1-P | Field mustard | cytosol | 95.73 | 100.0 |
| CDY09199 | Canola | nucleus | 63.35 | 71.77 |
| CDY28567 | Canola | mitochondrion, nucleus | 62.28 | 70.56 |
| CDY09204 | Canola | nucleus | 61.92 | 69.88 |
| CDY69485 | Canola | nucleus | 28.47 | 64.52 |
| CDY71457 | Canola | nucleus | 28.11 | 63.71 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 12.46 | 62.5 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 21.71 | 59.22 |
| CDY36151 | Canola | nucleus | 16.01 | 51.14 |
| CDY31547 | Canola | nucleus | 44.13 | 44.44 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 33.45 | 44.13 |
| CDY61930 | Canola | nucleus | 43.77 | 44.09 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 32.74 | 42.99 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 33.81 | 42.41 |
| CDX95426 | Canola | nucleus | 41.28 | 42.03 |
| CDY42198 | Canola | nucleus | 40.93 | 41.67 |
| KRH22644 | Soybean | nucleus | 20.28 | 41.01 |
| PGSC0003DMT400013136 | Potato | nucleus | 28.47 | 40.61 |
| CDY24623 | Canola | nucleus | 40.21 | 39.93 |
| AT5G60440.1 | Thale cress | nucleus | 42.35 | 39.8 |
| CDX81713 | Canola | nucleus | 22.78 | 39.51 |
| CDY55987 | Canola | nucleus | 23.49 | 39.29 |
| KRG91147 | Soybean | nucleus | 32.74 | 38.49 |
| KRG91148 | Soybean | nucleus | 33.1 | 38.43 |
| CDY46165 | Canola | nucleus | 38.43 | 38.16 |
| KRH35628 | Soybean | nucleus | 33.1 | 37.65 |
| KRH32946 | Soybean | nucleus | 22.42 | 36.42 |
| KRH32900 | Soybean | nucleus | 22.06 | 35.84 |
| KRH32912 | Soybean | nucleus | 22.06 | 35.84 |
| KRH33030 | Soybean | nucleus | 14.23 | 35.4 |
| KRH32917 | Soybean | nucleus | 22.42 | 35.39 |
| KRH32901 | Soybean | nucleus | 21.71 | 35.26 |
| KRH32916 | Soybean | nucleus | 21.71 | 35.26 |
| KRH32915 | Soybean | nucleus | 21.71 | 35.26 |
| KRH32909 | Soybean | nucleus | 21.71 | 35.26 |
| KRH72042 | Soybean | extracellular | 12.81 | 34.95 |
| KRH32910 | Soybean | nucleus | 22.06 | 34.83 |
| KRH32904 | Soybean | nucleus | 21.35 | 34.68 |
| KRG88448 | Soybean | nucleus | 21.0 | 34.1 |
| KRH71935 | Soybean | nucleus | 20.64 | 32.77 |
| CDY04574 | Canola | nucleus | 27.4 | 32.35 |
| KRH32873 | Soybean | nucleus | 24.91 | 32.26 |
| CDY15761 | Canola | nucleus | 25.27 | 31.84 |
| KRH28025 | Soybean | nucleus | 18.86 | 31.55 |
| KRG91149 | Soybean | mitochondrion | 27.05 | 31.41 |
| CDY31718 | Canola | nucleus | 26.69 | 31.38 |
| CDX74094 | Canola | nucleus | 19.93 | 31.28 |
| CDY57614 | Canola | nucleus | 19.93 | 31.28 |
| KRH35629 | Soybean | nucleus | 23.13 | 30.81 |
| KRH35627 | Soybean | mitochondrion | 27.05 | 30.77 |
| KRH72149 | Soybean | mitochondrion | 18.51 | 30.77 |
| CDY51695 | Canola | cytosol | 21.0 | 30.1 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 22.78 | 26.02 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 22.42 | 25.82 |
| KRH72146 | Soybean | nucleus | 17.44 | 25.79 |
| KRH32908 | Soybean | nucleus | 8.19 | 25.56 |
| CDX99867 | Canola | nucleus | 16.37 | 23.71 |
| CDY26304 | Canola | nucleus | 14.95 | 22.7 |
| CDY45604 | Canola | cytosol | 4.63 | 22.41 |
| CDY36150 | Canola | cytosol | 4.27 | 20.69 |
| CDY21751 | Canola | nucleus | 14.95 | 20.39 |
| CDX76788 | Canola | cytosol | 7.83 | 19.47 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 23.84 | 19.31 |
| CDX81816 | Canola | nucleus | 13.88 | 18.93 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 14.23 | 18.87 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 14.23 | 18.87 |
| CDY34751 | Canola | cytosol | 7.47 | 18.58 |
| CDX72908 | Canola | nucleus | 13.52 | 17.84 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078F3Y9 | UniProt:A0A078F3Y9 | EnsemblPlants:CDY09205 | ProteinID:CDY09205 |
| ProteinID:CDY09205.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00001451001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDF042 | SEG:seg |
Description
BnaA02g06310DBnaA02g06310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3Y9]
Coordinates
chrLK031993:-:727169..728251
Molecular Weight (calculated)
32074.0 Da
IEP (calculated)
7.711
GRAVY (calculated)
-0.903
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKKSKGRQK TKMVKMDKEN NLQVTFSKRK NGLFKKACEL CTLCDAEVAI FVFSPSGKVY SFGHLDVETI INRFEGIENP PLNPQPNMQL DEIHRNSPIQ
101: DLNNDLTELM NQLELEQKKT EDLKNKRKNS KVPEIWLKDS IGGLDLGQAK EFKGKLENLK KQVRYEAFKI LQGRYPHPSF YVGSSSNALF GVDGGININP
201: NMNLFDQRRM VNMNNFYNHN MALPNHPLPF GNYGHAEGFV PGYNYIPEPN PTENQNPSSK EENEAGNEHH HDGHSPDPRS D
101: DLNNDLTELM NQLELEQKKT EDLKNKRKNS KVPEIWLKDS IGGLDLGQAK EFKGKLENLK KQVRYEAFKI LQGRYPHPSF YVGSSSNALF GVDGGININP
201: NMNLFDQRRM VNMNNFYNHN MALPNHPLPF GNYGHAEGFV PGYNYIPEPN PTENQNPSSK EENEAGNEHH HDGHSPDPRS D
001: MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM IVFSPAGKVF SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK
101: SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
201: DQNGMTTNPT QTLLFGFDIM NRTPGV
101: SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
201: DQNGMTTNPT QTLLFGFDIM NRTPGV
Arabidopsis Description
AGL23Agamous-like MADS-box protein AGL23 [Source:UniProtKB/Swiss-Prot;Acc:O80807]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.