Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032347.1-P | Field mustard | nucleus | 97.84 | 97.31 |
| CDX99867 | Canola | nucleus | 94.59 | 90.21 |
| AT1G29962.1 | Thale cress | nucleus | 49.73 | 49.73 |
| AT1G28460.1 | Thale cress | nucleus | 47.57 | 48.35 |
| AT1G28450.1 | Thale cress | nucleus | 44.32 | 44.32 |
| CDY36151 | Canola | nucleus | 20.0 | 42.05 |
| AT1G54760.1 | Thale cress | nucleus | 35.68 | 40.99 |
| Solyc10g018070.1.1 | Tomato | nucleus | 21.08 | 32.77 |
| PGSC0003DMT400092871 | Potato | nucleus | 22.7 | 30.0 |
| CDY71457 | Canola | nucleus | 18.38 | 27.42 |
| CDY69485 | Canola | nucleus | 18.38 | 27.42 |
| CDX74094 | Canola | nucleus | 26.49 | 27.37 |
| CDY57614 | Canola | nucleus | 26.49 | 27.37 |
| Solyc10g018110.1.1 | Tomato | nucleus | 24.86 | 25.0 |
| PGSC0003DMT400093117 | Potato | nucleus | 24.32 | 25.0 |
| Solyc10g018080.1.1 | Tomato | cytosol | 20.0 | 24.5 |
| Solyc04g056740.1.1 | Tomato | nucleus | 23.78 | 24.44 |
| Solyc01g097850.1.1 | Tomato | nucleus | 22.7 | 24.42 |
| PGSC0003DMT400091428 | Potato | nucleus | 22.7 | 24.42 |
| Solyc03g033890.1.1 | Tomato | nucleus | 18.38 | 24.29 |
| PGSC0003DMT400087813 | Potato | nucleus | 23.78 | 24.18 |
| PGSC0003DMT400095957 | Potato | cytosol | 16.76 | 24.03 |
| PGSC0003DMT400088968 | Potato | nucleus | 14.05 | 23.64 |
| PGSC0003DMT400089966 | Potato | cytosol | 21.62 | 23.53 |
| PGSC0003DMT400091277 | Potato | nucleus | 22.7 | 23.33 |
| Solyc06g059780.1.1 | Tomato | nucleus | 22.7 | 23.33 |
| Solyc10g050900.1.1 | Tomato | nucleus | 21.08 | 23.08 |
| Solyc04g056550.1.1 | Tomato | nucleus | 22.7 | 23.08 |
| Solyc10g050950.1.1 | Tomato | nucleus | 20.0 | 22.98 |
| CDX81713 | Canola | nucleus | 20.0 | 22.84 |
| PGSC0003DMT400094886 | Potato | nucleus | 22.16 | 22.78 |
| PGSC0003DMT400095190 | Potato | nucleus | 22.16 | 22.78 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 30.27 | 22.76 |
| CDY55987 | Canola | nucleus | 20.54 | 22.62 |
| PGSC0003DMT400093319 | Potato | nucleus | 21.62 | 22.47 |
| PGSC0003DMT400090103 | Potato | nucleus | 21.62 | 22.47 |
| Solyc06g054680.1.1 | Tomato | nucleus | 21.62 | 22.22 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 29.19 | 22.13 |
| Solyc03g033570.1.1 | Tomato | nucleus | 21.62 | 21.98 |
| PGSC0003DMT400095980 | Potato | nucleus | 20.54 | 21.97 |
| Solyc10g050940.1.1 | Tomato | nucleus | 19.46 | 21.3 |
| PGSC0003DMT400088611 | Potato | nucleus | 18.92 | 21.21 |
| Solyc03g033880.1.1 | Tomato | cytosol | 21.08 | 21.2 |
| PGSC0003DMT400093647 | Potato | nucleus | 16.22 | 20.83 |
| Solyc03g033900.1.1 | Tomato | nucleus | 20.54 | 20.77 |
| Solyc03g033940.1.1 | Tomato | nucleus | 20.54 | 20.21 |
| PGSC0003DMT400094043 | Potato | cytosol | 16.22 | 20.13 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 22.7 | 19.53 |
| PGSC0003DMT400090655 | Potato | cytosol | 17.3 | 18.39 |
| CDY09199 | Canola | nucleus | 24.32 | 18.15 |
| CDY21751 | Canola | nucleus | 20.0 | 17.96 |
| Solyc03g034260.1.1 | Tomato | nucleus | 17.84 | 17.93 |
| CDX72908 | Canola | nucleus | 20.54 | 17.84 |
| CDX81816 | Canola | nucleus | 19.46 | 17.48 |
| CDY28567 | Canola | mitochondrion, nucleus | 23.24 | 17.34 |
| CDY09204 | Canola | nucleus | 23.24 | 17.27 |
| CDY04574 | Canola | nucleus | 22.16 | 17.23 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 19.46 | 16.98 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 18.92 | 16.51 |
| CDY31718 | Canola | nucleus | 21.08 | 16.32 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 30.27 | 16.14 |
| CDY42198 | Canola | nucleus | 23.78 | 15.94 |
| CDX95426 | Canola | nucleus | 23.78 | 15.94 |
| PGSC0003DMT400097360 | Potato | cytosol | 11.35 | 15.91 |
| CDY31547 | Canola | nucleus | 23.78 | 15.77 |
| CDY46165 | Canola | nucleus | 23.78 | 15.55 |
| CDY61930 | Canola | nucleus | 23.24 | 15.41 |
| CDY24623 | Canola | nucleus | 23.24 | 15.19 |
| PGSC0003DMT400095917 | Potato | cytosol | 10.81 | 15.15 |
| CDY09205 | Canola | nucleus | 22.7 | 14.95 |
| PGSC0003DMT400088010 | Potato | cytosol | 12.97 | 14.91 |
| CDY15761 | Canola | nucleus | 17.84 | 14.8 |
| PGSC0003DMT400089582 | Potato | cytosol | 11.89 | 13.66 |
| PGSC0003DMT400097679 | Potato | cytosol | 9.19 | 13.28 |
| PGSC0003DMT400027289 | Potato | cytosol | 8.65 | 12.4 |
| CDY45604 | Canola | cytosol | 3.78 | 12.07 |
| CDY36150 | Canola | cytosol | 3.78 | 12.07 |
| Solyc03g033930.1.1 | Tomato | cytosol | 5.95 | 11.0 |
| CDX76788 | Canola | cytosol | 5.41 | 8.85 |
| CDY34751 | Canola | cytosol | 5.41 | 8.85 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 4.86 | 8.74 |
| Solyc06g065960.1.1 | Tomato | nucleus | 3.78 | 7.69 |
| CDY51695 | Canola | cytosol | 5.95 | 5.61 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GM39 | UniProt:A0A078GM39 | EnsemblPlants:CDY26304 | ProteinID:CDY26304 |
| ProteinID:CDY26304.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00035003001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EDB50B | SEG:seg | : | : | : |
Description
BnaA09g26550DBnaA09g26550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM39]
Coordinates
chrLK032187:-:430745..431302
Molecular Weight (calculated)
20656.5 Da
IEP (calculated)
8.445
GRAVY (calculated)
-0.637
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKKTRGRQ KIDIKKVTKN EDRIITFSKR KNGIYTKLSE LSILCGADVG FLIYSGSGKP FTFGSPSFDD VAQRFLHGNH HSGIINGEGN SSASLIVDAH
101: KKVKMDEFCK NLNNLMEIKT DAEEEKLKMA EPAYAPSLPV KSTDEEEKQL LRRYEEYYEE LCEVAAAKIR GRYDAAASSS FPQHG
101: KKVKMDEFCK NLNNLMEIKT DAEEEKLKMA EPAYAPSLPV KSTDEEEKQL LRRYEEYYEE LCEVAAAKIR GRYDAAASSS FPQHG
001: MKPKKTKGKQ RINIKKIEKD EDRLVTLSKR RNGIYTKLSE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNGEA SSSSSSSLQR SVMNAHQQAK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
Arabidopsis Description
AGL64AGAMOUS-like 64 [Source:UniProtKB/TrEMBL;Acc:Q7XJK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.