Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44599 | Canola | nucleus | 70.38 | 60.12 |
| CDY36823 | Canola | nucleus | 61.32 | 57.7 |
| CDY36817 | Canola | plastid | 55.4 | 54.45 |
| CDY68883 | Canola | nucleus | 55.75 | 53.87 |
| CDY30838 | Canola | nucleus | 63.41 | 50.84 |
| CDY44595 | Canola | nucleus | 55.75 | 50.16 |
| AT5G40220.1 | Thale cress | nucleus | 40.07 | 35.49 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 40.77 | 35.45 |
| AT5G39750.1 | Thale cress | nucleus | 42.16 | 34.08 |
| CDY44597 | Canola | nucleus | 26.48 | 32.07 |
| AT5G39810.1 | Thale cress | plastid | 34.49 | 30.09 |
| AT5G37415.1 | Thale cress | nucleus | 32.4 | 29.43 |
| AT5G38740.1 | Thale cress | nucleus | 43.55 | 29.34 |
| AT5G40120.1 | Thale cress | nucleus | 39.02 | 29.09 |
| CDY63010 | Canola | plastid | 5.92 | 27.42 |
| CDY37821 | Canola | nucleus | 25.44 | 26.45 |
| CDY33964 | Canola | nucleus | 26.48 | 26.3 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 21.6 | 25.2 |
| CDY63012 | Canola | cytosol | 15.68 | 22.5 |
| CDX92256 | Canola | plastid | 26.83 | 20.81 |
| CDX99332 | Canola | plastid | 25.78 | 20.79 |
| CDX95509 | Canola | plastid | 19.51 | 19.38 |
| CDY18533 | Canola | nucleus | 4.88 | 19.18 |
| CDX93682 | Canola | nucleus | 16.03 | 19.01 |
| CDX93744 | Canola | nucleus | 18.82 | 18.95 |
| CDX73406 | Canola | plastid | 18.47 | 18.79 |
| CDX93708 | Canola | nucleus | 17.42 | 18.12 |
| CDX93743 | Canola | nucleus | 16.03 | 17.49 |
| CDX73409 | Canola | nucleus | 13.59 | 16.96 |
| CDY40199 | Canola | nucleus | 14.98 | 16.48 |
| CDY27890 | Canola | nucleus | 17.77 | 15.99 |
| CDY28851 | Canola | nucleus | 15.68 | 15.85 |
| CDY67867 | Canola | mitochondrion | 22.3 | 15.17 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 16.38 | 13.82 |
| CDY56522 | Canola | nucleus | 10.8 | 13.3 |
| CDX75976 | Canola | mitochondrion, nucleus | 5.23 | 7.39 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078JD85 | UniProt:A0A078JD85 | EnsemblPlants:CDY65583 | ProteinID:CDY65583 |
| ProteinID:CDY65583.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00046841001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EAFAD9 | SEG:seg |
Description
BnaCnng47860DBnaCnng47860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD85]
Coordinates
chrLK034842:-:1177..2257
Molecular Weight (calculated)
32965.9 Da
IEP (calculated)
7.600
GRAVY (calculated)
-0.707
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSPRPSSCS ESSSSSSSSS TYSLAPTSLN SRLLTIFKKA QELTTLSDIE ACVIHYGPDG ELRTWPENRD IVRDLALRYI QLDEAKRRKK NVNLYEFLNK
101: NKDKKKMANN FKKKAKKNVE ELKYPISDHY SPDEINQLIH SLELSYSTLQ ERRRFLAAKK HNESLNPSQF TPYHKSLAVQ KSGLHYQLMP YVGGYDQSMC
201: MGNNFQDPCL SNIQDYSVIP LELQESVSNY ELNQLMPHEL LWLGSKHDLY SGFMVDNPSF PQDFNPDMSS SYVDENRLLQ ASTLPSL
101: NKDKKKMANN FKKKAKKNVE ELKYPISDHY SPDEINQLIH SLELSYSTLQ ERRRFLAAKK HNESLNPSQF TPYHKSLAVQ KSGLHYQLMP YVGGYDQSMC
201: MGNNFQDPCL SNIQDYSVIP LELQESVSNY ELNQLMPHEL LWLGSKHDLY SGFMVDNPSF PQDFNPDMSS SYVDENRLLQ ASTLPSL
001: MTMRSSSPSS SSSYSLAFTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE KEKVRDIALR YSLLNEALRR KKSVNLHGFL NKKKNKGLKN
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC
Arabidopsis Description
AGL75Agamous-like MADS-box protein AGL75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLL0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.