CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69036
CDX70208
CDX72465
CDX73678
CDX74754
CDX75412
CDX77232
CDX85396
CDX85418
CDX86226
CDX86252
CDX92401
CDX93668
CDX95314
CDY01199
CDY06478
CDY12741
CDY12757
CDY16511
CDY16529
CDY18911
CDY18912
CDY23174
CDY28103
CDY32839
CDY44873
CDY46277
CDY49287
CDY49671
CDY50510
CDY53885
CDY60686
CDY67845

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27050.1	CDX73678	AT3G51920.1	17360592
AT5G27050.1	CDX95314	AT3G51920.1	17360592
AT5G27050.1	CDY23174	AT3G51920.1	17360592
AT5G27050.1	CDX92401	AT5G21274.1	17360592
AT5G27070.1	CDX70208	AT1G46408.1	15805477
AT5G27070.1	CDY44873	AT1G46408.1	15805477
AT5G27070.1	CDX74754	AT2G45650.1	15805477
AT5G27070.1	CDY18911	AT2G45650.1	15805477
AT5G27070.1	CDY18912	AT2G45650.1	15805477
AT5G27070.1	CDY53885	AT2G45650.1	15805477
AT5G27070.1	CDY60686	AT2G45650.1	15805477
AT5G27070.1	CDX73678	AT3G51920.1	17360592
AT5G27070.1	CDX95314	AT3G51920.1	17360592
AT5G27070.1	CDY23174	AT3G51920.1	17360592
AT5G27070.1	CDX69036	AT3G57230.1	15805477
AT5G27070.1	CDX72465	AT3G57230.1	15805477
AT5G27070.1	CDX75412	AT3G57230.1	15805477
AT5G27070.1	CDY49287	AT3G57230.1	15805477
AT5G27070.1	CDY06478	AT4G14640.1	17360592
AT5G27070.1	CDX92401	AT5G21274.1	17360592
AT5G27070.1	CDX77232	AT5G38620.1	15805477
AT5G27070.1	CDX85396	AT5G38620.1	15805477
AT5G27070.1	CDX85418	AT5G38620.1	15805477
AT5G27070.1	CDX86226	AT5G38620.1	15805477
AT5G27070.1	CDX86252	AT5G38620.1	15805477
AT5G27070.1	CDX93668	AT5G38620.1	15805477
AT5G27070.1	CDY01199	AT5G38620.1	15805477
AT5G27070.1	CDY12741	AT5G38620.1	15805477
AT5G27070.1	CDY12757	AT5G38620.1	15805477
AT5G27070.1	CDY16511	AT5G38620.1	15805477
AT5G27070.1	CDY16529	AT5G38620.1	15805477
AT5G27070.1	CDY28103	AT5G38620.1	15805477
AT5G27070.1	CDY32839	AT5G38620.1	15805477
AT5G27070.1	CDY46277	AT5G38620.1	15805477
AT5G27070.1	CDY49671	AT5G38620.1	15805477
AT5G27070.1	CDY50510	AT5G38620.1	15805477
AT5G27070.1	CDY67845	AT5G38620.1	15805477
AT5G27070.1	CDX77232	AT5G49420.1	15805477
AT5G27070.1	CDX85396	AT5G49420.1	15805477
AT5G27070.1	CDX85418	AT5G49420.1	15805477
AT5G27070.1	CDX86226	AT5G49420.1	15805477
AT5G27070.1	CDX86252	AT5G49420.1	15805477
AT5G27070.1	CDX93668	AT5G49420.1	15805477
AT5G27070.1	CDY01199	AT5G49420.1	15805477
AT5G27070.1	CDY12741	AT5G49420.1	15805477
AT5G27070.1	CDY12757	AT5G49420.1	15805477
AT5G27070.1	CDY16511	AT5G49420.1	15805477
AT5G27070.1	CDY16529	AT5G49420.1	15805477
AT5G27070.1	CDY28103	AT5G49420.1	15805477
AT5G27070.1	CDY32839	AT5G49420.1	15805477
AT5G27070.1	CDY46277	AT5G49420.1	15805477
AT5G27070.1	CDY49671	AT5G49420.1	15805477
AT5G27070.1	CDY50510	AT5G49420.1	15805477
AT5G27070.1	CDY67845	AT5G49420.1	15805477
AT5G27070.1	CDX77232	AT5G49490.1	15805477
AT5G27070.1	CDX85396	AT5G49490.1	15805477
AT5G27070.1	CDX85418	AT5G49490.1	15805477
AT5G27070.1	CDX86226	AT5G49490.1	15805477
AT5G27070.1	CDX86252	AT5G49490.1	15805477
AT5G27070.1	CDX93668	AT5G49490.1	15805477
AT5G27070.1	CDY01199	AT5G49490.1	15805477
AT5G27070.1	CDY12741	AT5G49490.1	15805477
AT5G27070.1	CDY12757	AT5G49490.1	15805477
AT5G27070.1	CDY16511	AT5G49490.1	15805477
AT5G27070.1	CDY16529	AT5G49490.1	15805477
AT5G27070.1	CDY28103	AT5G49490.1	15805477
AT5G27070.1	CDY32839	AT5G49490.1	15805477
AT5G27070.1	CDY46277	AT5G49490.1	15805477
AT5G27070.1	CDY49671	AT5G49490.1	15805477
AT5G27070.1	CDY50510	AT5G49490.1	15805477
AT5G27070.1	CDY67845	AT5G49490.1	15805477
AT5G27090.1	CDX77232	AT5G49490.1	15805477
AT5G27090.1	CDX85396	AT5G49490.1	15805477
AT5G27090.1	CDX85418	AT5G49490.1	15805477
AT5G27090.1	CDX86226	AT5G49490.1	15805477
AT5G27090.1	CDX86252	AT5G49490.1	15805477
AT5G27090.1	CDX93668	AT5G49490.1	15805477
AT5G27090.1	CDY01199	AT5G49490.1	15805477
AT5G27090.1	CDY12741	AT5G49490.1	15805477
AT5G27090.1	CDY12757	AT5G49490.1	15805477
AT5G27090.1	CDY16511	AT5G49490.1	15805477
AT5G27090.1	CDY16529	AT5G49490.1	15805477
AT5G27090.1	CDY28103	AT5G49490.1	15805477
AT5G27090.1	CDY32839	AT5G49490.1	15805477
AT5G27090.1	CDY46277	AT5G49490.1	15805477
AT5G27090.1	CDY49671	AT5G49490.1	15805477
AT5G27090.1	CDY50510	AT5G49490.1	15805477
AT5G27090.1	CDY67845	AT5G49490.1	15805477
AT5G27580.1	CDX70208	AT1G46408.1	15805477
AT5G27580.1	CDY44873	AT1G46408.1	15805477
AT5G27580.1	CDX77232	AT5G38620.1	15805477
AT5G27580.1	CDX85396	AT5G38620.1	15805477
AT5G27580.1	CDX85418	AT5G38620.1	15805477
AT5G27580.1	CDX86226	AT5G38620.1	15805477
AT5G27580.1	CDX86252	AT5G38620.1	15805477
AT5G27580.1	CDX93668	AT5G38620.1	15805477
AT5G27580.1	CDY01199	AT5G38620.1	15805477
AT5G27580.1	CDY12741	AT5G38620.1	15805477
AT5G27580.1	CDY12757	AT5G38620.1	15805477
AT5G27580.1	CDY16511	AT5G38620.1	15805477
AT5G27580.1	CDY16529	AT5G38620.1	15805477
AT5G27580.1	CDY28103	AT5G38620.1	15805477
AT5G27580.1	CDY32839	AT5G38620.1	15805477
AT5G27580.1	CDY46277	AT5G38620.1	15805477
AT5G27580.1	CDY49671	AT5G38620.1	15805477
AT5G27580.1	CDY50510	AT5G38620.1	15805477
AT5G27580.1	CDY67845	AT5G38620.1	15805477
AT5G27580.1	CDX77232	AT5G49420.1	15805477
AT5G27580.1	CDX85396	AT5G49420.1	15805477
AT5G27580.1	CDX85418	AT5G49420.1	15805477
AT5G27580.1	CDX86226	AT5G49420.1	15805477
AT5G27580.1	CDX86252	AT5G49420.1	15805477
AT5G27580.1	CDX93668	AT5G49420.1	15805477
AT5G27580.1	CDY01199	AT5G49420.1	15805477
AT5G27580.1	CDY12741	AT5G49420.1	15805477
AT5G27580.1	CDY12757	AT5G49420.1	15805477
AT5G27580.1	CDY16511	AT5G49420.1	15805477
AT5G27580.1	CDY16529	AT5G49420.1	15805477
AT5G27580.1	CDY28103	AT5G49420.1	15805477
AT5G27580.1	CDY32839	AT5G49420.1	15805477
AT5G27580.1	CDY46277	AT5G49420.1	15805477
AT5G27580.1	CDY49671	AT5G49420.1	15805477
AT5G27580.1	CDY50510	AT5G49420.1	15805477
AT5G27580.1	CDY67845	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G27050.1	Thale cress	nucleus	13.27	46.67
AT5G26865.1	Thale cress	nucleus	13.27	44.44
CDY63010	Canola	plastid	4.98	33.87
AT5G27090.1	Thale cress	nucleus, plastid	14.22	32.09
AT5G27944.1	Thale cress	nucleus	15.64	29.46
CDY63012	Canola	cytosol	13.74	29.0
AT5G27580.1	Thale cress	nucleus	15.17	28.7
CDY56522	Canola	nucleus	14.93	27.04
CDY28851	Canola	nucleus	17.77	26.41
AT5G27070.1	Thale cress	nucleus	16.82	24.74
CDX93708	Canola	nucleus	16.11	24.64
CDX93744	Canola	nucleus	16.59	24.56
CDX93682	Canola	nucleus	13.98	24.38
CDX73406	Canola	plastid	16.11	24.11
AT5G26950.1	Thale cress	nucleus	16.11	23.53
CDY65583	Canola	plastid	15.17	22.3
CDY68883	Canola	nucleus	15.64	22.22
CDY27890	Canola	nucleus	16.59	21.94
CDY37821	Canola	nucleus	14.22	21.74
CDY18534	Canola	mitochondrion, nucleus, plastid	12.56	21.54
CDY36817	Canola	plastid	14.69	21.23
CDY36823	Canola	nucleus	14.93	20.66
CDY33964	Canola	nucleus	13.98	20.42
CDY44599	Canola	nucleus	16.11	20.24
CDY18533	Canola	nucleus	3.32	19.18
CDY40595	Canola	cytosol, golgi, vacuole	15.4	19.12
CDX93743	Canola	nucleus	11.85	19.01
CDY44595	Canola	nucleus	13.98	18.5
CDX92256	Canola	plastid	16.11	18.38
CDX99332	Canola	plastid	15.4	18.26
CDY30838	Canola	nucleus	14.69	17.32
CDX73409	Canola	nucleus	9.24	16.96
CDX95509	Canola	plastid	11.61	16.95
CDY40199	Canola	nucleus	10.19	16.48
CDY44597	Canola	nucleus	5.92	10.55
CDX75976	Canola	mitochondrion, nucleus	4.74	9.85

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078JR44	UniProt:A0A078JR44	EnsemblPlants:CDY67867	ProteinID:CDY67867
ProteinID:CDY67867.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00067587001	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PANTHER:PTHR11945
PANTHER:PTHR11945:SF350	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EF313D	SEG:seg

Description

BnaCnng56720DBnaCnng56720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR44]

Coordinates

chrLK036595:+:4340..7916

Molecular Weight (calculated)

47722.1 Da

IEP (calculated)

8.420

GRAVY (calculated)

-0.352

Length

422 amino acids

Sequence
(BLAST)

001: MKKLSVRKET TLFKKPSSSL YKARVATMTP NYGFRTAAPA HVTQLFSKKI RRCTEPVRAC SYEEGEVRDK TGLVPCLKKR HVVTRCELPL VFVPATDEYT
101: CNKMFSLKFQ TGLKLSHLST SQASYFIYLC SSQAISICAF KLSVSAPSTL TKSSIVSVCP HTVLKKAFEL SELCGVNVCI IWFDREGNLV KTCPENEEAK
201: VRAMAERYSM LSEQERNKKS TNLSGFLNKK MMDDKKESLK KKDNKFSGKV SEFMDSLQSR FQTLQESLFL VDQQPKEASA VVSTDLSSNH PSTTTTSLSK
301: FSILLYNHDN GDFTELANNS SGFEQPSSCN QGYGSNYLDL LLGEQQRMMM ASCNNFDIPL PFSNTFHQFD HEFMQQTQPV QNESWDIWDN LLLSPLCISH
401: KDTLLVEQKF WGVVNGIVVV RD

Best Arabidopsis Sequence Match ( AT5G27050.1 )
(BLAST)

001: MFKKALELST LCNIEVCVIY YGRDGELFKT WPEDESKVRD MAERFTKLNE RERRKKRTNL SLFLRKKILD DNKLSGKVLE MKDSLERGLR VLQDKLLLLQ
101: PENQTKSLTR SVSSLDYVFV

Arabidopsis Description

AGL101AGAMOUS-like 101 [Source:UniProtKB/TrEMBL;Acc:Q4PSE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.