CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70208
CDX80577
CDX88231
CDY05333
CDY05514
CDY05515
CDY12872
CDY25046
CDY40477
CDY44873
CDY50584
CDY54756
CDY67043
CDY70782
CDY71564
CDY71896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18650.1	CDX80577	AT1G31640.1	15805477
AT3G18650.1	CDX88231	AT1G31640.1	15805477
AT3G18650.1	CDY05333	AT1G31640.1	15805477
AT3G18650.1	CDY05514	AT1G31640.1	15805477
AT3G18650.1	CDY05515	AT1G31640.1	15805477
AT3G18650.1	CDY67043	AT1G31640.1	15805477
AT3G18650.1	CDY70782	AT1G31640.1	15805477
AT3G18650.1	CDY71564	AT1G31640.1	15805477
AT3G18650.1	CDY71896	AT1G31640.1	15805477
AT3G18650.1	CDX70208	AT1G46408.1	15805477
AT3G18650.1	CDY44873	AT1G46408.1	15805477
AT3G18650.1	CDY25046	AT1G48150.1	15805477
AT3G18650.1	CDY50584	AT1G48150.1	15805477
AT3G18650.1	CDY12872	AT1G60880.1	15805477
AT3G18650.1	CDY40477	AT1G60880.1	15805477
AT3G18650.1	CDY54756	AT1G60880.1	15805477
AT3G18650.1	CDY12872	AT1G60920.1	15805477
AT3G18650.1	CDY40477	AT1G60920.1	15805477
AT3G18650.1	CDY54756	AT1G60920.1	15805477
AT3G18650.1	CDX70208	AT5G04640.1	15805477
AT3G18650.1	CDY44873	AT5G04640.1	15805477
AT3G18650.1	CDY25046	AT5G27130.1	15805477
AT3G18650.1	CDY50584	AT5G27130.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99332	Canola	plastid	52.22	29.78
CDX95509	Canola	plastid	41.38	29.07
CDX92256	Canola	plastid	42.86	23.51
CDY18534	Canola	mitochondrion, nucleus, plastid	26.6	21.95
AT3G18650.1	Thale cress	plastid	32.02	16.84
CDX93744	Canola	nucleus	11.82	8.42
CDY33964	Canola	nucleus	11.82	8.3
CDX73409	Canola	nucleus	8.87	7.83
CDY56522	Canola	nucleus	8.37	7.3
CDY37821	Canola	nucleus	9.85	7.25
CDX73406	Canola	plastid	9.85	7.09
CDY40199	Canola	nucleus	8.37	6.51
CDY36823	Canola	nucleus	9.36	6.23
CDY27890	Canola	nucleus	9.36	5.96
CDY44597	Canola	nucleus	6.9	5.91
CDX93682	Canola	nucleus	6.9	5.79
CDY18533	Canola	nucleus	1.97	5.48
CDX93743	Canola	nucleus	6.9	5.32
CDY65583	Canola	plastid	7.39	5.23
CDY44599	Canola	nucleus	8.37	5.06
CDY28851	Canola	nucleus	6.9	4.93
CDY67867	Canola	mitochondrion	9.85	4.74
CDY68883	Canola	nucleus	6.9	4.71
CDX93708	Canola	nucleus	6.4	4.71
CDY63012	Canola	cytosol	4.43	4.5
CDY44595	Canola	nucleus	6.9	4.39
CDY36817	Canola	plastid	5.91	4.11
CDY40595	Canola	cytosol, golgi, vacuole	5.91	3.53
CDY30838	Canola	nucleus	5.91	3.35
CDY63010	Canola	plastid	0.99	3.23

Protein Annotations

EnsemblPlants:CDX75976	EnsemblPlantsGene:GSBRNA2T00124013001	ProteinID:CDX75976	ProteinID:CDX75976.1	SEG:seg	UniParc:UPI0004EE50E9
MapMan:35.1	:	:	:	:	:

Description

BnaC03g40590D

Coordinates

chrLK031805:-:2348785..2349396

Molecular Weight (calculated)

22869.7 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.714

Length

203 amino acids

Sequence
(BLAST)

001: MMQHRLRAVV ESQRQRNMHY TNMAGQEQIM VPERSNQASM NLFNHGNSTL PQSQASISAS NQAYSLAPLP NSLTIHQDPN MEMYSRLLAS QGAGMNEVFN
101: TSMLPYNGFN TNCLNGFSNQ FYQNCFEVED PYGVQGAGIN NNMKVEDYSG LLWTQGTGMN GLQNGYNSNN NNTNGYPHQL VQTPPVYQYM DRSTQSVRPL
201: YEI

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.