CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75976
CDX92256
CDX95509
CDX99332
CDY06478
CDY18534
CDY25046
CDY33964
CDY37821
CDY50584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60880.1	CDY25046	AT1G48150.1	15805477
AT1G60880.1	CDY50584	AT1G48150.1	15805477
AT1G60880.1	CDX75976	AT3G18650.1	15805477
AT1G60880.1	CDX92256	AT3G18650.1	15805477
AT1G60880.1	CDX95509	AT3G18650.1	15805477
AT1G60880.1	CDX99332	AT3G18650.1	15805477
AT1G60880.1	CDY18534	AT3G18650.1	15805477
AT1G60880.1	CDY33964	AT4G11250.1	15805477
AT1G60880.1	CDY37821	AT4G11250.1	15805477
AT1G60880.1	CDY33964	AT5G65330.1	15805477
AT1G60880.1	CDY37821	AT5G65330.1	15805477
AT1G60920.1	CDY25046	AT1G48150.1	15805477
AT1G60920.1	CDY50584	AT1G48150.1	15805477
AT1G60920.1	CDX75976	AT3G18650.1	15805477
AT1G60920.1	CDX92256	AT3G18650.1	15805477
AT1G60920.1	CDX95509	AT3G18650.1	15805477
AT1G60920.1	CDX99332	AT3G18650.1	15805477
AT1G60920.1	CDY18534	AT3G18650.1	15805477
AT1G60920.1	CDY33964	AT4G11250.1	15805477
AT1G60920.1	CDY37821	AT4G11250.1	15805477
AT1G60920.1	CDY06478	AT4G14640.1	17360592
AT1G60920.1	CDY33964	AT5G65330.1	15805477
AT1G60920.1	CDY37821	AT5G65330.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040965.1-P	Field mustard	nucleus	100.0	100.0
AT1G60920.1	Thale cress	nucleus	55.05	57.07
AT1G60880.1	Thale cress	nucleus	54.04	53.23
CDY12872	Canola	nucleus	54.04	41.47
CDY40477	Canola	nucleus	50.51	40.49
CDX70208	Canola	nucleus	37.88	37.31
CDY44873	Canola	nucleus	37.37	36.82
CDY12757	Canola	nucleus	27.78	34.38
CDY50510	Canola	nucleus	35.35	30.57
CDX93668	Canola	nucleus	36.36	29.88
CDY49671	Canola	mitochondrion, nucleus	35.35	29.54
CDX77232	Canola	nucleus	38.38	28.57
CDY32839	Canola	nucleus	38.38	28.57
CDY67845	Canola	nucleus	37.37	27.82
CDY16529	Canola	nucleus	38.38	27.54
CDY16511	Canola	nucleus	36.87	27.14
CDY28103	Canola	plastid	33.33	26.72
CDX85418	Canola	nucleus	33.33	25.19
CDX85396	Canola	nucleus	34.85	24.21
CDY12741	Canola	nucleus	32.83	23.64
CDX86252	Canola	nucleus	35.35	23.03
CDX86226	Canola	nucleus	33.84	22.64
CDY46277	Canola	nucleus	22.73	20.27
CDY01199	Canola	nucleus	27.78	18.71
CDY25046	Canola	nucleus	20.71	15.59
CDY50584	Canola	nucleus	19.19	14.45
CDY12742	Canola	cytosol, mitochondrion, nucleus	3.54	12.96

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078IXB9	UniProt:A0A078IXB9	EnsemblPlants:CDY54756	ProteinID:CDY54756
ProteinID:CDY54756.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00014621001	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000253EB40	SEG:seg	:	:	:

Description

BnaA09g53170DBnaA09g53170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXB9]

Coordinates

chrLK033348:-:5230..5826

Molecular Weight (calculated)

21958.8 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.464

Length

198 amino acids

Sequence
(BLAST)

001: MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSAQIAILA TPPSTNSHAA FYSFGHSSVD HVVSSLLNDR CPLPTEQENN SRLGFWWEDE
101: GFNRSENIDE LKEATDAVSR MLNNLRLRLD ALKSNQSGGA LVIHQEEVLH ICDTETNNNE EMTNQITRLE GASGILVENV EDSLPNDGIF GDAKIDTL

Best Arabidopsis Sequence Match ( AT1G60920.1 )
(BLAST)

001: MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED
101: QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y

Arabidopsis Description

AGL55AGAMOUS-like 55 [Source:UniProtKB/TrEMBL;Acc:Q9C960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.