Factsheet for Bra040965.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra020600.1-P
Bra022341.1-P
Bra031864.1-P
Bra037571.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60880.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G60880.1	Bra022341.1-P	AT3G18650.1	15805477
AT1G60880.1	Bra037571.1-P	AT3G18650.1	15805477
AT1G60880.1	Bra031864.1-P	AT4G11250.1	15805477
AT1G60880.1	Bra031864.1-P	AT5G65330.1	15805477
AT1G60920.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G60920.1	Bra000214.1-P	AT2G41100.1	17360592
AT1G60920.1	Bra022341.1-P	AT3G18650.1	15805477
AT1G60920.1	Bra037571.1-P	AT3G18650.1	15805477
AT1G60920.1	Bra031864.1-P	AT4G11250.1	15805477
AT1G60920.1	Bra039723.1-P	AT4G14640.1	17360592
AT1G60920.1	Bra031864.1-P	AT5G65330.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54756	Canola	nucleus	100.0	100.0
AT1G60920.1	Thale cress	nucleus	55.05	57.07
AT1G60880.1	Thale cress	nucleus	54.04	53.23
Bra027116.1-P	Field mustard	nucleus	54.55	44.44
Bra018727.1-P	Field mustard	nucleus	36.87	29.8
Bra014217.1-P	Field mustard	nucleus	37.88	27.08
Bra037434.1-P	Field mustard	nucleus	34.85	26.44
Bra009436.1-P	Field mustard	nucleus	40.4	26.14
Bra010027.1-P	Field mustard	nucleus	33.84	19.42
Bra033492.1-P	Field mustard	nucleus	27.27	18.43
Bra020600.1-P	Field mustard	nucleus	20.71	15.59
Bra032767.1-P	Field mustard	nucleus	23.23	14.89

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra040965	EnsemblPlants:Bra040965.1	EnsemblPlants:Bra040965.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:M4FIN6	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF277	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253EB40
SEG:seg	:	:	:	:	:

Description

AT1G60920 (E=1e-048) agl55 | agl55 (AGAMOUS-LIKE 55); DNA binding / transcription factor

Coordinates

chrScaffold000343:+:20939..21535

Molecular Weight (calculated)

21958.8 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.464

Length

198 amino acids

Sequence
(BLAST)

001: MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSAQIAILA TPPSTNSHAA FYSFGHSSVD HVVSSLLNDR CPLPTEQENN SRLGFWWEDE
101: GFNRSENIDE LKEATDAVSR MLNNLRLRLD ALKSNQSGGA LVIHQEEVLH ICDTETNNNE EMTNQITRLE GASGILVENV EDSLPNDGIF GDAKIDTL

Best Arabidopsis Sequence Match ( AT1G60920.1 )
(BLAST)

001: MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED
101: QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y

Arabidopsis Description

AGL55AGAMOUS-like 55 [Source:UniProtKB/TrEMBL;Acc:Q9C960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.