Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G60920.1 | Thale cress | nucleus | 59.7 | 62.83 |
| Bra040965.1-P | Field mustard | nucleus | 53.23 | 54.04 |
| CDY54756 | Canola | nucleus | 53.23 | 54.04 |
| Bra027116.1-P | Field mustard | nucleus | 49.75 | 41.15 |
| CDY12872 | Canola | nucleus | 49.75 | 38.76 |
| CDY40477 | Canola | nucleus | 46.77 | 38.06 |
| AT1G46408.1 | Thale cress | nucleus | 36.32 | 27.44 |
| AT5G49490.1 | Thale cress | nucleus | 34.83 | 24.56 |
| AT5G04640.1 | Thale cress | nucleus | 36.32 | 22.67 |
| AT5G49420.1 | Thale cress | nucleus | 36.32 | 21.86 |
| AT5G38620.1 | Thale cress | nucleus | 36.82 | 21.2 |
| AT5G27130.1 | Thale cress | nucleus | 20.9 | 13.73 |
| AT1G48150.1 | Thale cress | nucleus | 17.41 | 10.84 |
| AT1G50780.1 | Thale cress | extracellular, vacuole | 12.94 | 8.05 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:842380 | UniProt:A0A178W6G0 | ProteinID:AAG51637.1 | ProteinID:AEE33743.1 |
| Symbol:AGL56 | ArrayExpress:AT1G60880 | EnsemblPlantsGene:AT1G60880 | RefSeq:AT1G60880 | TAIR:AT1G60880 | RefSeq:AT1G60880-TAIR-G |
| EnsemblPlants:AT1G60880.1 | TAIR:AT1G60880.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_176285.1 | ProteinID:OAP14080.1 | PFAM:PF00319 |
| PO:PO:0025074 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 | UniProt:Q9C963 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A192B | SEG:seg |
Description
AGL56AGL56 [Source:UniProtKB/TrEMBL;Acc:A0A178W6G0]
Coordinates
chr1:+:22411575..22412180
Molecular Weight (calculated)
22660.4 Da
IEP (calculated)
5.343
GRAVY (calculated)
-0.614
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKKTKIEI KKIINKPAKT VAFTKRREGL FRKASQLCLL SPATQIAILA APMTSKSHAS FYSFGHSSVD NVVSSLLYDH PPLTANQDNR SGLGFWWEDK
101: RFDVSENVEE LKEAVDAVSR MLNNVRCRLN DAVKSTQRDG GLEILHHQEE EVLQTRNDET KTNQTHEFEG GETSGSASWL ENEDDILHFD DDFYTGIDPL
201: F
101: RFDVSENVEE LKEAVDAVSR MLNNVRCRLN DAVKSTQRDG GLEILHHQEE EVLQTRNDET KTNQTHEFEG GETSGSASWL ENEDDILHFD DDFYTGIDPL
201: F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.