Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38620.1 | Thale cress | nucleus | 51.8 | 49.57 |
| CDY12757 | Canola | nucleus | 23.35 | 48.75 |
| AT5G49490.1 | Thale cress | nucleus | 37.13 | 43.51 |
| CDY28103 | Canola | plastid | 28.74 | 38.87 |
| Bra018727.1-P | Field mustard | nucleus | 28.14 | 38.37 |
| CDY32839 | Canola | nucleus | 30.54 | 38.35 |
| CDX77232 | Canola | nucleus | 30.54 | 38.35 |
| AT1G60920.1 | Thale cress | nucleus | 21.56 | 37.7 |
| CDY16511 | Canola | nucleus | 30.24 | 37.55 |
| CDY16529 | Canola | nucleus | 30.84 | 37.32 |
| Bra014217.1-P | Field mustard | nucleus | 30.84 | 37.18 |
| Bra037434.1-P | Field mustard | nucleus | 28.74 | 36.78 |
| CDY50510 | Canola | nucleus | 25.15 | 36.68 |
| CDY67845 | Canola | nucleus | 29.04 | 36.47 |
| AT1G60880.1 | Thale cress | nucleus | 21.86 | 36.32 |
| CDX85396 | Canola | nucleus | 30.54 | 35.79 |
| CDX93668 | Canola | nucleus | 25.75 | 35.68 |
| CDY49671 | Canola | mitochondrion, nucleus | 24.55 | 34.6 |
| CDY12741 | Canola | nucleus | 28.44 | 34.55 |
| Bra033492.1-P | Field mustard | nucleus | 30.24 | 34.47 |
| CDY01199 | Canola | nucleus | 30.24 | 34.35 |
| AT1G46408.1 | Thale cress | nucleus | 26.35 | 33.08 |
| AT5G04640.1 | Thale cress | nucleus | 30.84 | 31.99 |
| CDX86252 | Canola | nucleus | 28.44 | 31.25 |
| CDX86226 | Canola | nucleus | 27.54 | 31.08 |
| CDY46277 | Canola | nucleus | 20.06 | 30.18 |
| CDX85418 | Canola | nucleus | 23.35 | 29.77 |
| Bra010027.1-P | Field mustard | nucleus | 27.84 | 26.96 |
| Bra032767.1-P | Field mustard | nucleus | 23.65 | 25.57 |
| AT5G27130.1 | Thale cress | nucleus | 12.57 | 13.73 |
| AT1G48150.1 | Thale cress | nucleus | 12.87 | 13.31 |
| AT1G50780.1 | Thale cress | extracellular, vacuole | 9.28 | 9.6 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:835002 | ProteinID:AED95809.1 | ArrayExpress:AT5G49420 | EnsemblPlantsGene:AT5G49420 |
| RefSeq:AT5G49420 | TAIR:AT5G49420 | RefSeq:AT5G49420-TAIR-G | EnsemblPlants:AT5G49420.1 | TAIR:AT5G49420.1 | EMBL:AY141239 |
| Unigene:At.64280 | ncoils:Coil | EMBL:DQ447056 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_199753.3 | PFAM:PF00319 | PO:PO:0020093 |
| PO:PO:0025195 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 | UniProt:Q7X9H5 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00001B24E7 | : | : |
Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q7X9H5]
Coordinates
chr5:-:20034672..20036205
Molecular Weight (calculated)
37398.4 Da
IEP (calculated)
4.194
GRAVY (calculated)
-0.454
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.