Factsheet for Bra037434.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra004071.1-P
Bra006595.1-P
Bra007138.1-P
Bra007139.1-P
Bra015129.1-P
Bra018296.1-P
Bra018741.1-P
Bra018767.1-P
Bra020923.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra028019.1-P
Bra028020.1-P
Bra031864.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38620.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49420.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49490.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G49490.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G49490.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G49490.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra004071.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27090.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86252	Canola	nucleus	84.67	72.7
Bra010027.1-P	Field mustard	nucleus	71.26	53.91
Bra018727.1-P	Field mustard	nucleus	37.93	40.41
Bra014217.1-P	Field mustard	nucleus	37.55	35.38
Bra040965.1-P	Field mustard	nucleus	26.44	34.85
AT5G38620.1	Thale cress	nucleus	45.59	34.1
AT5G49490.1	Thale cress	nucleus	34.48	31.58
AT5G49420.1	Thale cress	nucleus	36.78	28.74
Bra033492.1-P	Field mustard	nucleus	31.8	28.33
Bra027116.1-P	Field mustard	nucleus	26.05	27.98
Bra009436.1-P	Field mustard	nucleus	30.65	26.14
Bra032767.1-P	Field mustard	nucleus	26.05	22.01
Bra020600.1-P	Field mustard	nucleus	15.33	15.21

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra037434	EnsemblPlants:Bra037434.1	EnsemblPlants:Bra037434.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4F8M2	InterPro:MADS_SRF-like
PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253F9F7	SEG:seg	:	:

Description

AT5G49420 (E=3e-038) | MADS-box protein (AGL84)

Coordinates

chrA06:-:21483751..21484536

Molecular Weight (calculated)

29186.7 Da

IEP (calculated)

4.812

GRAVY (calculated)

-0.520

Length

261 amino acids

Sequence
(BLAST)

001: MVKRVGGGGT KRKIDKMEKI SKREYRATTF SKRCSGLHSK AAQLCLLADA QIAILATPPS SQSNVSFFSF GHSSVDAVVN AYLMGQRLAP VREEPMEEDI
101: GVLMARKELG LELWWEKESL CESKDPRELM DAVKAMERML SKLRSGDFVS NYKQREEDLK NNEMTKRDVV LHKETQEPDG TLNLQAVCCI PDDDSPAGCN
201: KITEEQKQIL AICDSFCAKE DNNINGLSGS LDRSDQAMDH LMNIDGLIDL ETSYESSAFD Y

Best Arabidopsis Sequence Match ( AT5G38620.1 )
(BLAST)

001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV

Arabidopsis Description

MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.