Factsheet for Bra025607.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra014217.1-P
Bra018296.1-P
Bra018727.1-P
Bra020600.1-P
Bra031864.1-P
Bra032347.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38740.1	Bra032347.1-P	AT1G29962.1	15805477
AT5G38740.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G38740.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G38740.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G38740.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G38740.1	Bra020600.1-P	AT5G27130.1	15805477
AT5G38740.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G39810.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G39810.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G39810.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G39810.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G39810.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G39810.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G39810.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G40120.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G40120.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G40120.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G40120.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G40120.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G40220.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G40220.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G40220.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G41200.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G41200.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G41200.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G41200.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G41200.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44595	Canola	nucleus	75.07	82.13
Bra025619.1-P	Field mustard	nucleus	75.36	71.66
CDY44597	Canola	nucleus	45.56	67.09
Bra025609.1-P	Field mustard	nucleus	61.03	63.39
AT5G41200.1	Thale cress	nucleus, plastid	34.38	36.36
AT5G40220.1	Thale cress	nucleus	33.52	36.11
AT5G39750.1	Thale cress	nucleus	35.53	34.93
Bra031864.1-P	Field mustard	nucleus	31.52	33.23
AT5G39810.1	Thale cress	plastid	30.66	32.52
AT5G40120.1	Thale cress	nucleus	35.82	32.47
AT5G37415.1	Thale cress	nucleus	28.08	31.01
AT5G38740.1	Thale cress	nucleus	35.53	29.11
Bra007138.1-P	Field mustard	nucleus	18.34	22.78
Bra022341.1-P	Field mustard	plastid	23.5	22.28
Bra004071.1-P	Field mustard	nucleus	17.77	21.83
Bra020923.1-P	Field mustard	nucleus	12.89	21.53
Bra028019.1-P	Field mustard	nucleus	17.48	21.4
Bra028020.1-P	Field mustard	nucleus	15.76	20.91
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	19.2	19.59
Bra018741.1-P	Field mustard	nucleus	14.61	19.32
Bra018767.1-P	Field mustard	nucleus	13.75	15.69
Bra015129.1-P	Field mustard	nucleus	14.04	15.36
Bra007139.1-P	Field mustard	nucleus	5.16	10.59

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra025607	EnsemblPlants:Bra025607.1	EnsemblPlants:Bra025607.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4EA00	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544D13	SEG:seg	:	:

Description

AT5G40220 (E=2e-038) AGL43 | AGL43 (AGAMOUS-LIKE 43); transcription factor

Coordinates

chrA04:-:7516027..7517076

Molecular Weight (calculated)

40119.2 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.751

Length

349 amino acids

Sequence
(BLAST)

001: MRSPRPSSCS KCSSSPSSTH SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEL KTWPEDRDKV KDLALRYIQL DEAKRRKKSV NLYEFLNKMK
101: EKKTMINKKA KRNVEELKYP ISDHYSPHQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSLNPSHFT QESMLKNQEL CVNDKNSNNF QHLCVSDYSA
201: VQESALRYHS MLYDQNMMCM GNINNVQHPW LSNAHPPELQ EPNQLMQREL NYGFDQNMCM SDTTNSFSVV DPCLPNMLPD DFCFDFQDPY GGNMVGNPSF
301: SQDFFPDMSS SYVYGSRLLQ ESTLPSLSSS NITNENSEIP SNLPDDHRK

Best Arabidopsis Sequence Match ( AT5G65330.1 )
(BLAST)

001: MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR TWPKERETVK DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L

Arabidopsis Description

AGL78AGAMOUS-like 78 [Source:UniProtKB/TrEMBL;Acc:Q9FKQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.