Factsheet for Bra018727.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra004071.1-P
Bra006595.1-P
Bra007138.1-P
Bra007139.1-P
Bra015129.1-P
Bra018296.1-P
Bra018741.1-P
Bra018767.1-P
Bra020923.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra028019.1-P
Bra028020.1-P
Bra031864.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38620.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49420.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49490.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G49490.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G49490.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G49490.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra004071.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27090.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93668	Canola	nucleus	75.51	76.76
CDY50510	Canola	nucleus	70.61	75.55
CDY49671	Canola	mitochondrion, nucleus	68.16	70.46
Bra014217.1-P	Field mustard	nucleus	48.16	42.6
Bra037434.1-P	Field mustard	nucleus	40.41	37.93
Bra040965.1-P	Field mustard	nucleus	29.8	36.87
AT5G49490.1	Thale cress	nucleus	35.92	30.88
Bra027116.1-P	Field mustard	nucleus	29.39	29.63
AT5G49420.1	Thale cress	nucleus	38.37	28.14
AT5G38620.1	Thale cress	nucleus	40.0	28.08
Bra033492.1-P	Field mustard	nucleus	33.06	27.65
Bra010027.1-P	Field mustard	nucleus	38.37	27.25
Bra009436.1-P	Field mustard	nucleus	32.65	26.14
Bra032767.1-P	Field mustard	nucleus	27.76	22.01
Bra020600.1-P	Field mustard	nucleus	18.37	17.11

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra018727	EnsemblPlants:Bra018727.1	EnsemblPlants:Bra018727.1-P	ncoils:Coil
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DQD4
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253ED54	SEG:seg

Description

AT5G49420 (E=1e-035) | MADS-box protein (AGL84)

Coordinates

chrA06:-:2296065..2296802

Molecular Weight (calculated)

27513.1 Da

IEP (calculated)

4.096

GRAVY (calculated)

-0.533

Length

245 amino acids

Sequence
(BLAST)

001: MVKGGTKRKP EMKKITNKAS RATTFSKRRD GLYSKAAQLC VLSDAQIAIL ATPSSSSNSN ASFFSFGHSS VESVVSAYLS GQRLPPVSWR DTREDLGICM
101: ARKDLGLGFW WDDDKLVNSK NPEELMEAME SMKVLMSHLK GLEDQTLTTV DEEISPDLDE WSEMELTQLL QDCDDDVPPP PLVSNTDNKE EEDQTVSEKN
201: NNYVSSLPEK SLEEVTMDLD FDTIFEGLVP YDEADLFWSD DLLFT

Best Arabidopsis Sequence Match ( AT5G38620.1 )
(BLAST)

001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV

Arabidopsis Description

MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.