Factsheet for Bra031864.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra004927.1-P
Bra009436.1-P
Bra009911.1-P
Bra010027.1-P
Bra014217.1-P
Bra018727.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra027116.1-P
Bra032767.1-P
Bra033492.1-P
Bra037434.1-P
Bra040965.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11250.1	Bra009436.1-P	AT1G46408.1	15805477
AT4G11250.1	Bra020600.1-P	AT1G48150.1	15805477
AT4G11250.1	Bra027116.1-P	AT1G60880.1	15805477
AT4G11250.1	Bra040965.1-P	AT1G60880.1	15805477
AT4G11250.1	Bra027116.1-P	AT1G60920.1	15805477
AT4G11250.1	Bra040965.1-P	AT1G60920.1	15805477
AT4G11250.1	Bra009436.1-P	AT5G04640.1	15805477
AT4G11250.1	Bra020600.1-P	AT5G27130.1	15805477
AT4G11250.1	Bra010027.1-P	AT5G38620.1	15805477
AT4G11250.1	Bra014217.1-P	AT5G38620.1	15805477
AT4G11250.1	Bra018727.1-P	AT5G38620.1	15805477
AT4G11250.1	Bra032767.1-P	AT5G38620.1	15805477
AT4G11250.1	Bra033492.1-P	AT5G38620.1	15805477
AT4G11250.1	Bra037434.1-P	AT5G38620.1	15805477
AT4G11250.1	Bra010027.1-P	AT5G49420.1	15805477
AT4G11250.1	Bra014217.1-P	AT5G49420.1	15805477
AT4G11250.1	Bra018727.1-P	AT5G49420.1	15805477
AT4G11250.1	Bra032767.1-P	AT5G49420.1	15805477
AT4G11250.1	Bra033492.1-P	AT5G49420.1	15805477
AT4G11250.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G65330.1	Bra009911.1-P	AT1G31640.1	15805477
AT5G65330.1	Bra020524.1-P	AT1G31640.1	15805477
AT5G65330.1	Bra020525.1-P	AT1G31640.1	15805477
AT5G65330.1	Bra020550.1-P	AT1G31640.1	15805477
AT5G65330.1	Bra020552.1-P	AT1G31640.1	15805477
AT5G65330.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G65330.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G65330.1	Bra027116.1-P	AT1G60880.1	15805477
AT5G65330.1	Bra040965.1-P	AT1G60880.1	15805477
AT5G65330.1	Bra027116.1-P	AT1G60920.1	15805477
AT5G65330.1	Bra040965.1-P	AT1G60920.1	15805477
AT5G65330.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G65330.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G65330.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G65330.1	Bra020600.1-P	AT5G27130.1	15805477
AT5G65330.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G65330.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G65330.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G65330.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G65330.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G65330.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G65330.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G65330.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G65330.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G65330.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G65330.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G65330.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G65330.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G65330.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G65330.1	Bra037434.1-P	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37821	Canola	nucleus	81.27	97.46
CDY33964	Canola	nucleus	76.74	87.89
AT4G02235.1	Thale cress	nucleus	26.89	45.41
AT5G65330.1	Thale cress	nucleus	45.02	43.7
AT4G11250.1	Thale cress	nucleus	40.18	40.43
Bra025607.1-P	Field mustard	nucleus	33.23	31.52
Bra025609.1-P	Field mustard	nucleus	31.42	30.95
Bra025619.1-P	Field mustard	nucleus	33.53	30.25
Bra004071.1-P	Field mustard	nucleus	19.94	23.24
Bra022341.1-P	Field mustard	plastid	25.38	22.83
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	23.57	22.81
Bra020923.1-P	Field mustard	nucleus	13.6	21.53
Bra007138.1-P	Field mustard	nucleus	15.71	18.51
Bra028019.1-P	Field mustard	nucleus	15.71	18.25
Bra018741.1-P	Field mustard	nucleus	14.5	18.18
Bra018767.1-P	Field mustard	nucleus	15.11	16.34
Bra015129.1-P	Field mustard	nucleus	14.5	15.05
Bra028020.1-P	Field mustard	nucleus	11.48	14.45
Bra007139.1-P	Field mustard	nucleus	5.44	10.59

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra031864	EnsemblPlants:Bra031864.1	EnsemblPlants:Bra031864.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:M4EST4	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002546ABE	SEG:seg

Description

AT4G11250 (E=1e-055) AGL52 | AGL52; transcription factor

Coordinates

chrA02:+:27405610..27406605

Molecular Weight (calculated)

37758.1 Da

IEP (calculated)

9.826

GRAVY (calculated)

-0.733

Length

331 amino acids

Sequence
(BLAST)

001: MRASSSSSSN SLAATSLSNR LKTIFKKASE LSILCQVAVS VIYYGPNGDL KTWPKEKEVV KDMALRYKVA TKRKKSSNLR DFLEGKLEND KNLKKNKKKT
101: KREFENVKYP DCYPVLDHYS PDQLHELVLS LQGTLSTMEE RIRVLEAKKQ RNTNLVHQTV QPSNPSKCSL YLYNHDDATL SQLPLSASHS NQLINYQNHL
201: RMQQQRLYDP CVSTTQGHPA LLSVQESRLK NQLMQQQEAY GSHHNVRMMN NTTNSKVLGH PCPLKTIPKE FSFDLQKNPN DDMVGRPKYS QDFPNLFLAY
301: ADIPQLQTSS LPSIHQTIPN INLIPDNSRC P

Best Arabidopsis Sequence Match ( AT5G65330.1 )
(BLAST)

001: MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR TWPKERETVK DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L

Arabidopsis Description

AGL78AGAMOUS-like 78 [Source:UniProtKB/TrEMBL;Acc:Q9FKQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.