Factsheet for Bra020552.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra002480.1-P
Bra002611.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra007829.1-P
Bra009436.1-P
Bra009911.1-P
Bra011938.1-P
Bra015643.1-P
Bra017376.1-P
Bra018296.1-P
Bra020242.1-P
Bra020245.1-P
Bra020246.1-P
Bra020247.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra022341.1-P
Bra025126.1-P
Bra026543.1-P
Bra031864.1-P
Bra032057.1-P
Bra033467.1-P
Bra035685.1-P
Bra037571.1-P
Bra038326.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31630.1	Bra011938.1-P	AT1G01530.1	15805477
AT1G31630.1	Bra035685.1-P	AT1G01530.1	15805477
AT1G31630.1	Bra011938.1-P	AT1G65360.1	15805477
AT1G31630.1	Bra035685.1-P	AT1G65360.1	15805477
AT1G31630.1	Bra004007.1-P	AT1G69120.1	15805477
AT1G31630.1	Bra004361.1-P	AT1G69120.1	15805477
AT1G31630.1	Bra038326.1-P	AT1G69120.1	15805477
AT1G31630.1	Bra017376.1-P	AT2G03710.1	15805477
AT1G31630.1	Bra025126.1-P	AT2G03710.1	15805477
AT1G31630.1	Bra026543.1-P	AT2G03710.1	15805477
AT1G31630.1	Bra007829.1-P	AT2G24840.1	18713950
AT1G31630.1	Bra032057.1-P	AT2G24840.1	18713950
AT1G31630.1	Bra000392.1-P	AT2G45650.1	15805477
AT1G31630.1	Bra004927.1-P	AT2G45650.1	15805477
AT1G31630.1	Bra011938.1-P	AT4G36590.1	15805477
AT1G31630.1	Bra035685.1-P	AT4G36590.1	15805477
AT1G31630.1	Bra009911.1-P	AT5G27960.1	15805477
AT1G31630.1	Bra020524.1-P	AT5G27960.1	15805477
AT1G31630.1	Bra020525.1-P	AT5G27960.1	15805477
AT1G31630.1	Bra020550.1-P	AT5G27960.1	15805477
AT1G31630.1	Bra020552.1-P	AT5G27960.1	15805477
AT1G31630.1	Bra002611.1-P	AT5G58890.1	15805477
AT1G31630.1	Bra002480.1-P	AT5G60440.1	15805477
AT1G31630.1	Bra020242.1-P	AT5G60440.1	15805477
AT1G31630.1	Bra020245.1-P	AT5G60440.1	15805477
AT1G31630.1	Bra020246.1-P	AT5G60440.1	15805477
AT1G31630.1	Bra020247.1-P	AT5G60440.1	15805477
AT1G31640.1	Bra011938.1-P	AT1G65360.1	15805477
AT1G31640.1	Bra035685.1-P	AT1G65360.1	15805477
AT1G31640.1	Bra004007.1-P	AT1G69120.1	15805477
AT1G31640.1	Bra004361.1-P	AT1G69120.1	15805477
AT1G31640.1	Bra038326.1-P	AT1G69120.1	15805477
AT1G31640.1	Bra017376.1-P	AT2G03710.1	15805477
AT1G31640.1	Bra025126.1-P	AT2G03710.1	15805477
AT1G31640.1	Bra026543.1-P	AT2G03710.1	15805477
AT1G31640.1	Bra000392.1-P	AT2G45650.1	15805477
AT1G31640.1	Bra004927.1-P	AT2G45650.1	15805477
AT1G31640.1	Bra022341.1-P	AT3G18650.1	15805477
AT1G31640.1	Bra037571.1-P	AT3G18650.1	15805477
AT1G31640.1	Bra009911.1-P	AT5G27960.1	15805477
AT1G31640.1	Bra020524.1-P	AT5G27960.1	15805477
AT1G31640.1	Bra020525.1-P	AT5G27960.1	15805477
AT1G31640.1	Bra020550.1-P	AT5G27960.1	15805477
AT1G31640.1	Bra020552.1-P	AT5G27960.1	15805477
AT1G31640.1	Bra002480.1-P	AT5G60440.1	15805477
AT1G31640.1	Bra020242.1-P	AT5G60440.1	15805477
AT1G31640.1	Bra020245.1-P	AT5G60440.1	15805477
AT1G31640.1	Bra020246.1-P	AT5G60440.1	15805477
AT1G31640.1	Bra020247.1-P	AT5G60440.1	15805477
AT1G31640.1	Bra031864.1-P	AT5G65330.1	15805477
AT1G65300.1	Bra011938.1-P	AT1G01530.1	15805477
AT1G65300.1	Bra035685.1-P	AT1G01530.1	15805477
AT1G65300.1	Bra007829.1-P	AT2G24840.1	18713950
AT1G65300.1	Bra032057.1-P	AT2G24840.1	18713950
AT1G65300.1	Bra018296.1-P	AT3G51920.1	17360592
AT1G65300.1	Bra033467.1-P	AT3G51920.1	17360592
AT1G65300.1	Bra011938.1-P	AT4G36590.1	15805477
AT1G65300.1	Bra035685.1-P	AT4G36590.1	15805477
AT1G65300.1	Bra002480.1-P	AT5G60440.1	15805477
AT1G65300.1	Bra020242.1-P	AT5G60440.1	15805477
AT1G65300.1	Bra020245.1-P	AT5G60440.1	15805477
AT1G65300.1	Bra020246.1-P	AT5G60440.1	15805477
AT1G65300.1	Bra020247.1-P	AT5G60440.1	15805477
AT1G65330.1	Bra011938.1-P	AT1G01530.1	15805477
AT1G65330.1	Bra035685.1-P	AT1G01530.1	15805477
AT1G65330.1	Bra009436.1-P	AT1G46408.1	15805477
AT1G65330.1	Bra007829.1-P	AT2G24840.1	18713950
AT1G65330.1	Bra032057.1-P	AT2G24840.1	18713950
AT1G65330.1	Bra011938.1-P	AT4G36590.1	15805477
AT1G65330.1	Bra035685.1-P	AT4G36590.1	15805477
AT1G65330.1	Bra009436.1-P	AT5G04640.1	15805477
AT1G65330.1	Bra020600.1-P	AT5G27130.1	15805477
AT1G65330.1	Bra002480.1-P	AT5G60440.1	15805477
AT1G65330.1	Bra020242.1-P	AT5G60440.1	15805477
AT1G65330.1	Bra020245.1-P	AT5G60440.1	15805477
AT1G65330.1	Bra020246.1-P	AT5G60440.1	15805477
AT1G65330.1	Bra020247.1-P	AT5G60440.1	15805477
AT5G26650.1	Bra011938.1-P	AT1G01530.1	15805477
AT5G26650.1	Bra035685.1-P	AT1G01530.1	15805477
AT5G26650.1	Bra002480.1-P	AT5G60440.1	15805477
AT5G26650.1	Bra020242.1-P	AT5G60440.1	15805477
AT5G26650.1	Bra020245.1-P	AT5G60440.1	15805477
AT5G26650.1	Bra020246.1-P	AT5G60440.1	15805477
AT5G26650.1	Bra020247.1-P	AT5G60440.1	15805477
AT5G27960.1	Bra009911.1-P	AT1G31630.1	15805477
AT5G27960.1	Bra020524.1-P	AT1G31630.1	15805477
AT5G27960.1	Bra020525.1-P	AT1G31630.1	15805477
AT5G27960.1	Bra020550.1-P	AT1G31630.1	15805477
AT5G27960.1	Bra020552.1-P	AT1G31630.1	15805477
AT5G27960.1	Bra009911.1-P	AT1G31640.1	15805477
AT5G27960.1	Bra020524.1-P	AT1G31640.1	15805477
AT5G27960.1	Bra020525.1-P	AT1G31640.1	15805477
AT5G27960.1	Bra020550.1-P	AT1G31640.1	15805477
AT5G27960.1	Bra020552.1-P	AT1G31640.1	15805477
AT5G27960.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27960.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G27960.1	Bra015643.1-P	AT1G77980.1	15805477
AT5G27960.1	Bra011938.1-P	AT4G36590.1	15805477
AT5G27960.1	Bra035685.1-P	AT4G36590.1	15805477
AT5G27960.1	Bra002480.1-P	AT5G60440.1	15805477
AT5G27960.1	Bra020242.1-P	AT5G60440.1	15805477
AT5G27960.1	Bra020245.1-P	AT5G60440.1	15805477
AT5G27960.1	Bra020246.1-P	AT5G60440.1	15805477
AT5G27960.1	Bra020247.1-P	AT5G60440.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71564	Canola	nucleus	95.31	95.87
CDY70782	Canola	nucleus	83.58	88.24
Bra020550.1-P	Field mustard	nucleus	84.16	75.53
Bra020524.1-P	Field mustard	nucleus	60.41	57.22
Bra020525.1-P	Field mustard	nucleus	64.52	55.7
GSMUA_Achr2P18410_001	Banana	nucleus	5.28	43.9
Bra009911.1-P	Field mustard	mitochondrion, nucleus	45.16	42.31
AT5G27960.1	Thale cress	nucleus	32.26	34.38
AT1G65300.1	Thale cress	nucleus	27.27	33.45
AT1G65330.1	Thale cress	nucleus	27.27	33.33
AT5G35120.1	Thale cress	cytosol	10.26	32.71
Bra020555.1-P	Field mustard	nucleus	20.53	32.41
AT5G26650.1	Thale cress	nucleus	34.02	31.69
AT1G59930.1	Thale cress	cytosol	12.02	31.06
AT5G26580.1	Thale cress	nucleus	29.91	29.57
Bra009913.1-P	Field mustard	nucleus	17.6	29.56
HORVU6Hr1G003730.1	Barley	nucleus	7.33	29.41
TraesCS3D01G138400.1	Wheat	cytosol	15.84	28.42
TraesCS3B01G155200.1	Wheat	cytosol	15.84	27.69
TraesCS6A01G020500.1	Wheat	mitochondrion, nucleus	12.61	27.56
Bra005166.1-P	Field mustard	mitochondrion, nucleus	9.97	27.2
GSMUA_Achr3P05500_001	Banana	nucleus	17.6	27.15
AT1G31630.1	Thale cress	mitochondrion	26.98	27.14
KXG28893	Sorghum	nucleus	13.2	26.79
TraesCS3A01G137500.1	Wheat	cytosol	15.25	26.13
KXG28892	Sorghum	nucleus	14.08	25.95
Bra024521.1-P	Field mustard	mitochondrion	12.32	25.93
HORVU7Hr1G121600.1	Barley	nucleus	13.78	25.41
Bra012335.1-P	Field mustard	mitochondrion	12.02	25.31
OQU83806	Sorghum	nucleus	12.9	25.14
EES10067	Sorghum	mitochondrion	14.96	24.76
TraesCS6D01G024000.1	Wheat	mitochondrion, nucleus	13.2	24.46
GSMUA_Achr3P24560_001	Banana	nucleus	16.42	24.14
EES06917	Sorghum	mitochondrion, nucleus	18.18	23.94
GSMUA_AchrUn_...	Banana	nucleus	16.13	23.61
TraesCS7B01G484600.1	Wheat	nucleus	11.14	23.17
PGSC0003DMT400003073	Potato	cytosol	7.33	23.15
GSMUA_Achr3P08500_001	Banana	nucleus	15.54	23.04
Bra018490.1-P	Field mustard	nucleus	19.35	22.76
KXG32310	Sorghum	nucleus	16.13	22.73
HORVU6Hr1G085540.1	Barley	mitochondrion	15.25	22.71
TraesCS7D01G550500.1	Wheat	nucleus	12.32	22.7
Bra029469.1-P	Field mustard	nucleus	20.23	22.7
Bra041022.1-P	Field mustard	nucleus	21.99	22.46
TraesCS6B01G391600.1	Wheat	nucleus	16.13	22.45
TraesCS6B01G391700.1	Wheat	nucleus	16.13	22.45
HORVU2Hr1G022060.1	Barley	nucleus, plastid	13.49	22.44
KXG28889	Sorghum	nucleus	16.42	22.4
TraesCS6A01G020900.1	Wheat	mitochondrion	13.78	22.27
TraesCS7D01G548500.1	Wheat	plastid	15.25	22.13
GSMUA_Achr8P06150_001	Banana	nucleus	15.84	22.04
TraesCS6B01G027900.1	Wheat	nucleus	14.66	22.03
TraesCS6D01G342000.1	Wheat	nucleus	15.54	21.99
TraesCS2B01G171700.1	Wheat	mitochondrion	12.32	21.99
GSMUA_Achr2P18400_001	Banana	nucleus	14.96	21.98
TraesCS6B01G028100.1	Wheat	mitochondrion	12.02	21.81
TraesCS7A01G561000.1	Wheat	nucleus	14.96	21.79
TraesCS6A01G022700.1	Wheat	mitochondrion	14.37	21.59
Zm00001d048894_P001	Maize	mitochondrion	15.54	21.46
TraesCS7B01G485400.1	Wheat	nucleus	14.66	21.37
TraesCS6B01G028300.1	Wheat	mitochondrion	13.2	21.33
OQU83804	Sorghum	mitochondrion	14.66	21.28
Bra035448.1-P	Field mustard	nucleus	16.42	21.21
TraesCS6D01G341700.1	Wheat	nucleus	14.96	21.16
TraesCS6D01G023800.1	Wheat	mitochondrion	14.08	21.15
TraesCS6D01G024300.1	Wheat	mitochondrion	14.08	21.15
TraesCS7B01G484000.1	Wheat	nucleus	11.44	21.08
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	15.25	20.97
TraesCS7A01G559500.1	Wheat	nucleus	11.73	20.94
Zm00001d013792_P001	Maize	mitochondrion, nucleus	17.01	20.86
Bra035449.1-P	Field mustard	nucleus	16.13	20.83
TraesCS6A01G358900.1	Wheat	nucleus	14.37	20.76
Bra039404.1-P	Field mustard	nucleus	18.18	20.53
AT1G31640.1	Thale cress	mitochondrion	27.86	20.47
TraesCS3A01G312600.1	Wheat	nucleus	14.96	20.32
KXG28890	Sorghum	mitochondrion	14.96	20.0
TraesCS3B01G159600.1	Wheat	nucleus	14.66	19.92
KXG28888	Sorghum	nucleus	14.66	19.61
Os03t0582400-01	Rice	nucleus	14.08	19.28
TraesCS6A01G359100.1	Wheat	mitochondrion	14.66	19.16
TraesCS6B01G391800.1	Wheat	mitochondrion	14.66	19.16
TraesCS6D01G342100.1	Wheat	mitochondrion	14.66	19.16
TraesCS7D01G550600.1	Wheat	nucleus	13.2	18.67
TraesCS6A01G359700.1	Wheat	nucleus	12.32	18.5
Zm00001d016791_P001	Maize	mitochondrion	15.54	18.47
KXG38099	Sorghum	plastid	17.01	18.41
TraesCS2D01G128000.1	Wheat	nucleus	11.44	18.4
TraesCS7D01G551000.1	Wheat	nucleus	12.61	18.22
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	13.49	17.69
TraesCS7B01G484500.1	Wheat	nucleus	12.32	17.43
EER91288	Sorghum	mitochondrion, nucleus	15.84	17.2
TraesCS7A01G551000.1	Wheat	nucleus	15.54	16.93
TraesCS7B01G484100.1	Wheat	mitochondrion, nucleus	11.73	16.6
TraesCS7D01G536700.1	Wheat	nucleus	14.96	16.29
Bra040248.1-P	Field mustard	nucleus	19.06	15.74
TraesCS6D01G342700.1	Wheat	nucleus	13.49	14.89
TraesCS2D01G150900.1	Wheat	mitochondrion	12.9	14.33
TraesCS6B01G392600.1	Wheat	nucleus	12.9	14.19
TraesCS2B01G146100.1	Wheat	nucleus	14.37	13.5
TraesCS7A01G398800.1	Wheat	nucleus	12.02	12.73
TraesCS7B01G299400.1	Wheat	nucleus	12.02	12.69
TraesCS7D01G393000.1	Wheat	nucleus	12.02	12.69
TraesCS2A01G146400.1	Wheat	mitochondrion	12.9	12.36
HORVU6Hr1G085670.1	Barley	nucleus	11.44	11.75
PGSC0003DMT400089615	Potato	cytosol	3.81	5.46

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra020552	EnsemblPlants:Bra020552.1	EnsemblPlants:Bra020552.1-P	ncoils:Coil
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DVK8
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF355
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002546C89	SEG:seg

Description

AT1G65330 (E=4e-031) PHE1, AGL37 | PHE1 (PHERES1); DNA binding / transcription factor

Coordinates

chrA02:-:24616802..24617827

Molecular Weight (calculated)

38456.0 Da

IEP (calculated)

5.113

GRAVY (calculated)

-0.746

Length

341 amino acids

Sequence
(BLAST)

001: MPKGRIKIEP MTNSTARNQT FRKRKTGLLK KANELSTLCG VKVCVVINSC DNTETEFWPS REDAEAVHSA FMGVLPEERC KKMYDQERHL EERIQKGQAK
101: AMRLQAENRE IELREVMFDL LKGETLKPHH YDDPCFIGEL NHFIGDYVKN LSHRIEFLEA NGEPVPPNVA ATDASGPFVV GTEGLVSNPT EAYDHMRQFD
201: GMDMSVKEEA PGGFNDHVHH QNMNHQEPFQ YQTPANFDDQ TQPMFYGSNQ DMYTGLNHDQ GQSSNQYPNS NQSFVGLLMG QPQQMSDGQD PATVASMDDK
301: NNGYYQLPIT SQMLLTTTTA AAADLSGHRI NNGWLTRFGL D

Best Arabidopsis Sequence Match ( AT5G26650.1 )
(BLAST)

001: MKKVKLSLIA NERSRKTSFI KRKDGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE GAKKVASRFL EMPPTARTKK MMDQETYLME RITKAKEQLK
101: NLAAENRELQ VRRFMFDCVE GKMSQYHYDA KDLQDLQSCI NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE SFSDSPIHAT TGVVDTLNAT
201: NPHVLTGDMT PFLDADATAV TASSRFFDHI PYENMNMSQN LHEPFQHLVP TNVCDFFQNQ NMNQVQYQAP NNLFNQIQRE FYNINLNLNL NLNSNQYLNQ
301: QQSFMNPMVE QHMNHVGGRE SIPFVDGNCY NYHQLPSNQL PAVDHASTSY MPSTTGVYDP YINNNL

Arabidopsis Description

AGL36Agamous-like MADS-box protein AGL36 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.