Skip to main content
crop-pal logo
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01530.1 Bra009911.1-P AT1G31630.1 15805477
AT1G01530.1 Bra020524.1-P AT1G31630.1 15805477
AT1G01530.1 Bra020525.1-P AT1G31630.1 15805477
AT1G01530.1 Bra020550.1-P AT1G31630.1 15805477
AT1G01530.1 Bra020552.1-P AT1G31630.1 15805477
AT1G01530.1 Bra009911.1-P AT1G65300.1 15805477
AT1G01530.1 Bra020524.1-P AT1G65300.1 15805477
AT1G01530.1 Bra020525.1-P AT1G65300.1 15805477
AT1G01530.1 Bra020550.1-P AT1G65300.1 15805477
AT1G01530.1 Bra020552.1-P AT1G65300.1 15805477
AT1G01530.1 Bra009911.1-P AT1G65330.1 15805477
AT1G01530.1 Bra020524.1-P AT1G65330.1 15805477
AT1G01530.1 Bra020525.1-P AT1G65330.1 15805477
AT1G01530.1 Bra020550.1-P AT1G65330.1 15805477
AT1G01530.1 Bra020552.1-P AT1G65330.1 15805477
AT1G01530.1 Bra009911.1-P AT5G26650.1 15805477
AT1G01530.1 Bra020524.1-P AT5G26650.1 15805477
AT1G01530.1 Bra020525.1-P AT5G26650.1 15805477
AT1G01530.1 Bra020550.1-P AT5G26650.1 15805477
AT1G01530.1 Bra020552.1-P AT5G26650.1 15805477
AT1G65360.1 Bra009911.1-P AT1G31630.1 15805477
AT1G65360.1 Bra020524.1-P AT1G31630.1 15805477
AT1G65360.1 Bra020525.1-P AT1G31630.1 15805477
AT1G65360.1 Bra020550.1-P AT1G31630.1 15805477
AT1G65360.1 Bra020552.1-P AT1G31630.1 15805477
AT1G65360.1 Bra009911.1-P AT1G31640.1 15805477
AT1G65360.1 Bra020524.1-P AT1G31640.1 15805477
AT1G65360.1 Bra020525.1-P AT1G31640.1 15805477
AT1G65360.1 Bra020550.1-P AT1G31640.1 15805477
AT1G65360.1 Bra020552.1-P AT1G31640.1 15805477
AT4G36590.1 Bra009911.1-P AT1G31630.1 15805477
AT4G36590.1 Bra020524.1-P AT1G31630.1 15805477
AT4G36590.1 Bra020525.1-P AT1G31630.1 15805477
AT4G36590.1 Bra020550.1-P AT1G31630.1 15805477
AT4G36590.1 Bra020552.1-P AT1G31630.1 15805477
AT4G36590.1 Bra009911.1-P AT1G65300.1 15805477
AT4G36590.1 Bra020524.1-P AT1G65300.1 15805477
AT4G36590.1 Bra020525.1-P AT1G65300.1 15805477
AT4G36590.1 Bra020550.1-P AT1G65300.1 15805477
AT4G36590.1 Bra020552.1-P AT1G65300.1 15805477
AT4G36590.1 Bra009911.1-P AT1G65330.1 15805477
AT4G36590.1 Bra020524.1-P AT1G65330.1 15805477
AT4G36590.1 Bra020525.1-P AT1G65330.1 15805477
AT4G36590.1 Bra020550.1-P AT1G65330.1 15805477
AT4G36590.1 Bra020552.1-P AT1G65330.1 15805477
AT4G36590.1 Bra039404.1-P AT3G05860.1 15805477
AT4G36590.1 Bra009911.1-P AT5G27960.1 15805477
AT4G36590.1 Bra020524.1-P AT5G27960.1 15805477
AT4G36590.1 Bra020525.1-P AT5G27960.1 15805477
AT4G36590.1 Bra020550.1-P AT5G27960.1 15805477
AT4G36590.1 Bra020552.1-P AT5G27960.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04574 Canola nucleus 99.58 99.58
Solyc04g025050.1.1 Tomato golgi, mitochondrion, nucleus, plastid 12.61 53.57
VIT_01s0010g01500.t01 Wine grape nucleus 21.85 50.49
KRH22644 Soybean nucleus 25.21 43.17
Bra035685.1-P Field mustard nucleus 52.52 42.66
PGSC0003DMT400013136 Potato nucleus 31.09 37.56
Bra032057.1-P Field mustard nucleus 28.15 37.22
VIT_03s0088g00600.t01 Wine grape nucleus 32.77 36.45
KRH32916 Soybean nucleus 26.05 35.84
Bra026764.1-P Field mustard nucleus 25.21 35.71
VIT_03s0088g00550.t01 Wine grape nucleus 31.93 35.68
VIT_03s0088g00510.t01 Wine grape nucleus 33.19 35.27
KRH32901 Soybean nucleus 25.63 35.26
KRH32912 Soybean nucleus 25.63 35.26
Bra007829.1-P Field mustard nucleus 30.25 34.78
KRH32909 Soybean nucleus 25.21 34.68
KRG88448 Soybean nucleus 25.21 34.68
KRH32946 Soybean nucleus 25.21 34.68
AT4G36590.1 Thale cress nucleus 36.13 34.68
KRH33030 Soybean nucleus 16.39 34.51
KRH32910 Soybean nucleus 25.63 34.27
KRH32904 Soybean nucleus 24.79 34.1
KRH32915 Soybean nucleus 24.79 34.1
KRG91148 Soybean nucleus 34.45 33.88
KRH32917 Soybean nucleus 25.21 33.71
AT1G65360.1 Thale cress nucleus 31.93 33.63
KRH32900 Soybean nucleus 24.37 33.53
KRH72042 Soybean extracellular 14.29 33.01
KRG91147 Soybean nucleus 32.77 32.64
KRH72149 Soybean mitochondrion 23.11 32.54
KRH35628 Soybean nucleus 33.19 31.98
Bra002480.1-P Field mustard nucleus 36.97 31.54
Bra038225.1-P Field mustard nucleus 34.45 31.42
Bra022434.1-P Field mustard nucleus 36.97 31.1
KRG91149 Soybean mitochondrion 30.67 30.17
Bra020242.1-P Field mustard nucleus 30.67 29.44
KRH71935 Soybean nucleus 21.85 29.38
KRH28025 Soybean nucleus 20.59 29.17
KRH32873 Soybean nucleus 26.47 29.03
AT1G01530.1 Thale cress nucleus 29.41 28.34
KRH35627 Soybean mitochondrion 28.99 27.94
Bra020247.1-P Field mustard cytosol 30.67 27.14
Bra021910.1-P Field mustard nucleus 20.17 26.37
Bra001209.1-P Field mustard nucleus 18.07 24.02
KRH72146 Soybean nucleus 18.49 23.16
KRH32908 Soybean nucleus 8.4 22.22
Bra032347.1-P Field mustard nucleus 17.23 22.04
KRH35629 Soybean nucleus 19.33 21.8
GSMUA_Achr5P01940_001 Banana nucleus 21.85 21.31
GSMUA_Achr4P28260_001 Banana nucleus 21.85 21.14
Bra026674.1-P Field mustard nucleus 17.65 20.39
Bra020246.1-P Field mustard cytosol 14.29 20.0
Bra003884.1-P Field mustard cytosol 16.81 18.87
Bra022446.1-P Field mustard cytosol 15.13 18.37
Bra020245.1-P Field mustard nucleus 10.5 17.86
GSMUA_Achr5P01990_001 Banana nucleus 24.37 16.71
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EnsemblPlantsGene:Bra011938EnsemblPlants:Bra011938.1EnsemblPlants:Bra011938.1-Pncoils:Coil
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0046983InterPro:IPR002100
InterPro:IPR036879UniProt:M4D630PFAM:PF00319PRINTS:PR00404PFscan:PS50066PANTHER:PTHR11945
PANTHER:PTHR11945:SF185SMART:SM00432SUPFAM:SSF55455InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI00025412DF
Description
AT4G36590 (E=2e-050) | MADS-box protein (AGL40)
Coordinates
chrA07:+:11150529..11152135
Molecular Weight (calculated)
27088.2 Da
IEP (calculated)
8.470
GRAVY (calculated)
-0.803
Length
238 amino acids
Sequence
(BLAST)
001: MPENKRGRQK VPIAKMEKDA NLQVTFSKRR QGLFKKASEL CTLCRVGMGV IVFSPGQKVF SFGNPDVKSV LDNFKNHNHN PLLYTQDGLN PTIQNLNSLL
101: TQEMAILEME KKRKKELDEI KNKREETEKW WEKPPNQLDL RQNTCLTSAL ENLKMELVSQ RSQHLQAIDP PNHYGESYNN IVGGGNVDLF DQTRMFDGNA
201: SNYNPNSIIS NHGPMFGNND NTNVFEALGP RSNLNLPE
Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.