Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra009911.1-P | |
Bra020524.1-P | |
Bra020525.1-P | |
Bra020550.1-P | |
Bra020552.1-P | |
Bra039404.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY04574 | Canola | nucleus | 99.58 | 99.58 |
Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 12.61 | 53.57 |
VIT_01s0010g01500.t01 | Wine grape | nucleus | 21.85 | 50.49 |
KRH22644 | Soybean | nucleus | 25.21 | 43.17 |
Bra035685.1-P | Field mustard | nucleus | 52.52 | 42.66 |
PGSC0003DMT400013136 | Potato | nucleus | 31.09 | 37.56 |
Bra032057.1-P | Field mustard | nucleus | 28.15 | 37.22 |
VIT_03s0088g00600.t01 | Wine grape | nucleus | 32.77 | 36.45 |
KRH32916 | Soybean | nucleus | 26.05 | 35.84 |
Bra026764.1-P | Field mustard | nucleus | 25.21 | 35.71 |
VIT_03s0088g00550.t01 | Wine grape | nucleus | 31.93 | 35.68 |
VIT_03s0088g00510.t01 | Wine grape | nucleus | 33.19 | 35.27 |
KRH32901 | Soybean | nucleus | 25.63 | 35.26 |
KRH32912 | Soybean | nucleus | 25.63 | 35.26 |
Bra007829.1-P | Field mustard | nucleus | 30.25 | 34.78 |
KRH32909 | Soybean | nucleus | 25.21 | 34.68 |
KRG88448 | Soybean | nucleus | 25.21 | 34.68 |
KRH32946 | Soybean | nucleus | 25.21 | 34.68 |
AT4G36590.1 | Thale cress | nucleus | 36.13 | 34.68 |
KRH33030 | Soybean | nucleus | 16.39 | 34.51 |
KRH32910 | Soybean | nucleus | 25.63 | 34.27 |
KRH32904 | Soybean | nucleus | 24.79 | 34.1 |
KRH32915 | Soybean | nucleus | 24.79 | 34.1 |
KRG91148 | Soybean | nucleus | 34.45 | 33.88 |
KRH32917 | Soybean | nucleus | 25.21 | 33.71 |
AT1G65360.1 | Thale cress | nucleus | 31.93 | 33.63 |
KRH32900 | Soybean | nucleus | 24.37 | 33.53 |
KRH72042 | Soybean | extracellular | 14.29 | 33.01 |
KRG91147 | Soybean | nucleus | 32.77 | 32.64 |
KRH72149 | Soybean | mitochondrion | 23.11 | 32.54 |
KRH35628 | Soybean | nucleus | 33.19 | 31.98 |
Bra002480.1-P | Field mustard | nucleus | 36.97 | 31.54 |
Bra038225.1-P | Field mustard | nucleus | 34.45 | 31.42 |
Bra022434.1-P | Field mustard | nucleus | 36.97 | 31.1 |
KRG91149 | Soybean | mitochondrion | 30.67 | 30.17 |
Bra020242.1-P | Field mustard | nucleus | 30.67 | 29.44 |
KRH71935 | Soybean | nucleus | 21.85 | 29.38 |
KRH28025 | Soybean | nucleus | 20.59 | 29.17 |
KRH32873 | Soybean | nucleus | 26.47 | 29.03 |
AT1G01530.1 | Thale cress | nucleus | 29.41 | 28.34 |
KRH35627 | Soybean | mitochondrion | 28.99 | 27.94 |
Bra020247.1-P | Field mustard | cytosol | 30.67 | 27.14 |
Bra021910.1-P | Field mustard | nucleus | 20.17 | 26.37 |
Bra001209.1-P | Field mustard | nucleus | 18.07 | 24.02 |
KRH72146 | Soybean | nucleus | 18.49 | 23.16 |
KRH32908 | Soybean | nucleus | 8.4 | 22.22 |
Bra032347.1-P | Field mustard | nucleus | 17.23 | 22.04 |
KRH35629 | Soybean | nucleus | 19.33 | 21.8 |
GSMUA_Achr5P01940_001 | Banana | nucleus | 21.85 | 21.31 |
GSMUA_Achr4P28260_001 | Banana | nucleus | 21.85 | 21.14 |
Bra026674.1-P | Field mustard | nucleus | 17.65 | 20.39 |
Bra020246.1-P | Field mustard | cytosol | 14.29 | 20.0 |
Bra003884.1-P | Field mustard | cytosol | 16.81 | 18.87 |
Bra022446.1-P | Field mustard | cytosol | 15.13 | 18.37 |
Bra020245.1-P | Field mustard | nucleus | 10.5 | 17.86 |
GSMUA_Achr5P01990_001 | Banana | nucleus | 24.37 | 16.71 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | EnsemblPlantsGene:Bra011938 | EnsemblPlants:Bra011938.1 | EnsemblPlants:Bra011938.1-P | ncoils:Coil |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 |
InterPro:IPR036879 | UniProt:M4D630 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00025412DF |
Description
AT4G36590 (E=2e-050) | MADS-box protein (AGL40)
Coordinates
chrA07:+:11150529..11152135
Molecular Weight (calculated)
27088.2 Da
IEP (calculated)
8.470
GRAVY (calculated)
-0.803
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MPENKRGRQK VPIAKMEKDA NLQVTFSKRR QGLFKKASEL CTLCRVGMGV IVFSPGQKVF SFGNPDVKSV LDNFKNHNHN PLLYTQDGLN PTIQNLNSLL
101: TQEMAILEME KKRKKELDEI KNKREETEKW WEKPPNQLDL RQNTCLTSAL ENLKMELVSQ RSQHLQAIDP PNHYGESYNN IVGGGNVDLF DQTRMFDGNA
201: SNYNPNSIIS NHGPMFGNND NTNVFEALGP RSNLNLPE
101: TQEMAILEME KKRKKELDEI KNKREETEKW WEKPPNQLDL RQNTCLTSAL ENLKMELVSQ RSQHLQAIDP PNHYGESYNN IVGGGNVDLF DQTRMFDGNA
201: SNYNPNSIIS NHGPMFGNND NTNVFEALGP RSNLNLPE
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.