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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g025050.1.1 Tomato golgi, mitochondrion, nucleus, plastid 15.73 69.64
VIT_01s0010g01500.t01 Wine grape nucleus 23.39 56.31
KRH22644 Soybean nucleus 24.19 43.17
PGSC0003DMT400013136 Potato nucleus 30.24 38.07
VIT_03s0088g00550.t01 Wine grape nucleus 32.66 38.03
VIT_03s0088g00600.t01 Wine grape nucleus 32.66 37.85
CDY31718 Canola nucleus 35.89 37.24
VIT_03s0088g00510.t01 Wine grape nucleus 32.66 36.16
Bra011938.1-P Field mustard nucleus 34.68 36.13
KRH32901 Soybean nucleus 25.0 35.84
CDY04574 Canola nucleus 34.27 35.71
KRH33030 Soybean nucleus 16.13 35.4
KRH32912 Soybean nucleus 24.6 35.26
KRH32946 Soybean nucleus 24.6 35.26
CDY15761 Canola nucleus 31.45 34.98
KRG88448 Soybean nucleus 24.19 34.68
KRH32909 Soybean nucleus 24.19 34.68
KRH32910 Soybean nucleus 24.6 34.27
KRH32904 Soybean nucleus 23.79 34.1
KRH32915 Soybean nucleus 23.79 34.1
KRH32916 Soybean nucleus 23.79 34.1
KRH32900 Soybean nucleus 23.79 34.1
AT1G65360.1 Thale cress nucleus 31.05 34.07
KRG91147 Soybean nucleus 32.66 33.89
KRG91148 Soybean nucleus 33.06 33.88
KRH32917 Soybean nucleus 24.19 33.71
KRH28025 Soybean nucleus 22.58 33.33
KRH35628 Soybean nucleus 33.06 33.2
KRH72042 Soybean extracellular 12.9 31.07
AT1G01530.1 Thale cress nucleus 30.24 30.36
AT2G34440.1 Thale cress nucleus 20.97 30.23
KRG91149 Soybean mitochondrion 29.44 30.17
AT5G60440.1 Thale cress nucleus 35.89 29.77
KRH72149 Soybean mitochondrion 19.76 28.99
KRH71935 Soybean nucleus 20.16 28.25
Bra035685.1-P Field mustard nucleus 32.26 27.3
KRH32873 Soybean nucleus 23.79 27.19
KRH35627 Soybean mitochondrion 27.02 27.13
AT3G66656.1 Thale cress nucleus 18.95 26.4
AT2G24840.1 Thale cress nucleus 27.82 26.14
AT1G28460.1 Thale cress nucleus 18.15 24.73
KRH35629 Soybean nucleus 20.97 24.64
AT1G29962.1 Thale cress nucleus 17.74 23.78
AT1G72350.1 Thale cress nucleus 21.37 23.66
GSMUA_Achr4P28260_001 Banana nucleus 22.98 23.17
KRH72146 Soybean nucleus 17.34 22.63
AT1G17310.2 Thale cress nucleus 20.56 22.37
AT1G28450.1 Thale cress nucleus 16.53 22.16
GSMUA_Achr5P01940_001 Banana nucleus 20.97 21.31
AT1G54760.1 Thale cress nucleus 12.5 19.25
KRH32908 Soybean nucleus 6.05 16.67
GSMUA_Achr5P01990_001 Banana nucleus 19.76 14.12
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EntrezGene:829811UniProt:A0A178UZM5ProteinID:AEE86675.1ArrayExpress:AT4G36590
EnsemblPlantsGene:AT4G36590RefSeq:AT4G36590TAIR:AT4G36590RefSeq:AT4G36590-TAIR-GEnsemblPlants:AT4G36590.1TAIR:AT4G36590.1
EMBL:AY086178EMBL:AY141234Unigene:At.31315ProteinID:CAB16834.1ProteinID:CAB80325.1ncoils:Coil
EMBL:DQ446902GO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:IPR002100
InterPro:IPR036879InterPro:MADS_MEF2-likeRefSeq:NP_195377.1UniProt:O23222ProteinID:OAO98953.1PFAM:PF00319
PO:PO:0001185PO:PO:0004507PO:PO:0007611PO:PO:0009009PO:PO:0009046PO:PO:0009089
PO:PO:0025195PRINTS:PR00404PFscan:PS50066PANTHER:PTHR11945PANTHER:PTHR11945:SF185SMART:SM00432
SUPFAM:SSF55455InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI00000ABA10SEG:seg:
Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
Coordinates
chr4:-:17260937..17262227
Molecular Weight (calculated)
28471.9 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.629
Length
248 amino acids
Sequence
(BLAST)
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.