Factsheet for VIT_03s0088g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0060g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60440.1	VIT_14s0060g00300.t01	AT5G48670.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0088g00550.t01	Wine grape	nucleus	76.79	80.75
VIT_01s0010g01500.t01	Wine grape	nucleus	37.05	80.58
VIT_03s0088g00600.t01	Wine grape	nucleus	73.66	77.1
VIT_01s0010g01530.t01	Wine grape	nucleus	56.7	65.46
VIT_03s0088g00590.t01	Wine grape	nucleus	52.68	55.14
PGSC0003DMT400013136	Potato	nucleus	48.21	54.82
Solyc01g106720.1.1	Tomato	nucleus	51.34	54.5
KRH22644	Soybean	nucleus	32.59	52.52
CDY69485	Canola	nucleus	28.12	50.81
CDY71457	Canola	nucleus	28.12	50.81
VIT_03s0088g00610.t01	Wine grape	cytosol	46.88	47.95
KRG91148	Soybean	nucleus	49.11	45.45
KRH32912	Soybean	nucleus	34.38	44.51
KRG91147	Soybean	nucleus	46.88	43.93
KRH32901	Soybean	nucleus	33.48	43.35
KRH32909	Soybean	nucleus	33.48	43.35
KRH32946	Soybean	nucleus	33.48	43.35
KRH32910	Soybean	nucleus	34.38	43.26
KRH32917	Soybean	nucleus	34.38	43.26
KRH32904	Soybean	nucleus	33.04	42.77
KRH32900	Soybean	nucleus	33.04	42.77
KRH32915	Soybean	nucleus	33.04	42.77
KRH35628	Soybean	nucleus	46.88	42.51
KRH32916	Soybean	nucleus	32.59	42.2
KRG88448	Soybean	nucleus	32.59	42.2
KRH71935	Soybean	nucleus	30.36	38.42
CDX95426	Canola	nucleus	47.32	38.41
CDY42198	Canola	nucleus	46.43	37.68
CDY24623	Canola	nucleus	47.32	37.46
VIT_00s0386g00010.t01	Wine grape	nucleus	33.93	37.44
KRH72149	Soybean	mitochondrion	28.12	37.28
AT5G60440.1	Thale cress	nucleus	49.55	37.12
Bra022434.1-P	Field mustard	nucleus	46.88	37.1
KRH28025	Soybean	nucleus	27.68	36.9
KRH72042	Soybean	extracellular	16.96	36.89
Bra038225.1-P	Field mustard	nucleus	42.86	36.78
KRH32873	Soybean	nucleus	35.27	36.41
CDY46165	Canola	nucleus	45.98	36.4
CDY09199	Canola	nucleus	40.18	36.29
KRG91149	Soybean	mitochondrion	38.84	35.95
KRH35627	Soybean	mitochondrion	39.29	35.63
CDY28567	Canola	mitochondrion, nucleus	39.29	35.48
Bra020242.1-P	Field mustard	nucleus	39.29	35.48
KRH33030	Soybean	nucleus	17.86	35.4
CDY09204	Canola	nucleus	39.29	35.34
CDY09205	Canola	nucleus	42.41	33.81
Bra002480.1-P	Field mustard	nucleus	41.96	33.69
AT1G65360.1	Thale cress	nucleus	33.93	33.63
KRH32908	Soybean	nucleus	13.39	33.33
CDY31547	Canola	nucleus	41.52	33.33
Bra011938.1-P	Field mustard	nucleus	35.27	33.19
CDY04574	Canola	nucleus	35.27	33.19
CDY31718	Canola	nucleus	35.27	33.05
AT1G01530.1	Thale cress	nucleus	36.16	32.79
CDY15761	Canola	nucleus	32.59	32.74
Bra020247.1-P	Field mustard	cytosol	39.29	32.71
AT4G36590.1	Thale cress	nucleus	36.16	32.66
CDY61930	Canola	nucleus	40.62	32.62
KRH72146	Soybean	nucleus	25.89	30.53
VIT_10s0003g03970.t01	Wine grape	nucleus	28.12	30.0
VIT_07s0005g06590.t01	Wine grape	nucleus	28.12	30.0
KRH35629	Soybean	nucleus	28.12	29.86
GSMUA_Achr5P01940_001	Banana	nucleus	28.12	25.82
GSMUA_Achr4P28260_001	Banana	nucleus	28.12	25.61
Bra022446.1-P	Field mustard	cytosol	21.88	25.0
CDY51695	Canola	cytosol	21.88	25.0
Bra035685.1-P	Field mustard	nucleus	32.14	24.57
Bra020246.1-P	Field mustard	cytosol	16.96	22.35
GSMUA_Achr5P01990_001	Banana	nucleus	31.25	20.17
Bra020245.1-P	Field mustard	nucleus	12.5	20.0

Protein Annotations

EntrezGene:100251544	wikigene:100251544	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI25117	ProteinID:CBI25117.3
ncoils:Coil	UniProt:D7T3N5	EMBL:FN595512	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
EntrezGene:LOC100251544	wikigene:LOC100251544	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001BE2582	ArrayExpress:VIT_03s0088g00510	EnsemblPlantsGene:VIT_03s0088g00510	EnsemblPlants:VIT_03s0088g00510.t01	RefSeq:XP_002271290	RefSeq:XP_002271290.1

Description

No Description!

Coordinates

chr3:+:8696026..8697570

Molecular Weight (calculated)

25164.4 Da

IEP (calculated)

9.773

GRAVY (calculated)

-0.382

Length

224 amino acids

Sequence
(BLAST)

001: MAPTRKSKGR QKVEMTKMTK ESNLQVTFSK RRSGLFKKAS ELCTLCGAEI AIIVFSPGKK MYSFGHPGVE SIIDRFLTGN PLPHSGALQL FEAHRSANVR
101: DLNMQLTQVL NQLEGEKKRG EALTQMKKAS QAQYWWAAPI EELSFEQLEL LKVSLENLKR NVEMHADKHM MEASNPLTFF LSSSVGAGVP YDAHIAAFDP
201: LNFNFGYGGI ISLSKQFENQ NYRT

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.