Factsheet for VIT_03s0088g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_14s0060g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24840.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G24840.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G24840.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT2G24840.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT2G24840.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G24840.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G24840.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT2G24840.1	VIT_14s0060g00300.t01	AT5G48670.1	18599653
AT2G24840.1	VIT_14s0060g00300.t01	AT5G48670.1	18713950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0088g00610.t01	Wine grape	cytosol	74.77	73.06
CDY36151	Canola	nucleus	25.23	61.36
VIT_01s0010g01500.t01	Wine grape	nucleus	29.44	61.16
Solyc01g106710.1.1	Tomato	nucleus	61.22	59.28
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	61.22	59.28
VIT_03s0088g00550.t01	Wine grape	nucleus	56.07	56.34
PGSC0003DMT400094062	Potato	nucleus	51.4	53.92
VIT_03s0088g00510.t01	Wine grape	nucleus	55.14	52.68
VIT_03s0088g00600.t01	Wine grape	nucleus	51.87	51.87
KRG91150	Soybean	nucleus	54.67	51.77
KRH35626	Soybean	nucleus	53.74	50.88
VIT_01s0010g01530.t01	Wine grape	nucleus	45.33	50.0
Bra032057.1-P	Field mustard	nucleus	38.32	45.56
CDX81713	Canola	nucleus	31.78	41.98
Bra026764.1-P	Field mustard	nucleus	32.71	41.67
CDY55987	Canola	nucleus	32.71	41.67
Bra007829.1-P	Field mustard	nucleus	37.85	39.13
VIT_00s0386g00010.t01	Wine grape	nucleus	35.05	36.95
AT2G24840.1	Thale cress	nucleus	42.06	34.09
VIT_07s0005g06590.t01	Wine grape	nucleus	30.37	30.95
VIT_10s0003g03970.t01	Wine grape	nucleus	30.37	30.95
CDY36150	Canola	cytosol	7.48	27.59
GSMUA_Achr5P01940_001	Banana	nucleus	31.31	27.46
CDY34751	Canola	cytosol	14.02	26.55
CDY45604	Canola	cytosol	7.01	25.86
CDX76788	Canola	cytosol	13.55	25.66
GSMUA_Achr4P28260_001	Banana	nucleus	27.57	23.98
GSMUA_Achr5P01990_001	Banana	nucleus	35.05	21.61

Protein Annotations

EntrezGene:100242931	wikigene:100242931	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A5AZX6	EMBL:AM441828
ProteinID:CAN63001	ProteinID:CAN63001.1	ProteinID:CCB49626	ProteinID:CCB49626.1	ncoils:Coil	EMBL:FN595512
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EntrezGene:LOC100242931	wikigene:LOC100242931	InterPro:MADS_MEF2-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000151FCFB	ArrayExpress:VIT_03s0088g00590	EnsemblPlantsGene:VIT_03s0088g00590
EnsemblPlants:VIT_03s0088g00590.t01	RefSeq:XP_002270964	RefSeq:XP_002270964.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:8776002..8776646

Molecular Weight (calculated)

24178.3 Da

IEP (calculated)

9.267

GRAVY (calculated)

-0.361

Length

214 amino acids

Sequence
(BLAST)

001: MVKKPSKGRQ KIEISKIPKK NHLQVTFSKR RSGLFKKASE LCTLCGANVA IIVFSPAGKV FSFGHPDVES IVDRFFTCNP IPEPNGLHLI EAHRNASVRE
101: LNLQLTQVLN QLEAEKKRGE ILSQMRRASQ TQCWWEAPIN ELSMPELEQL KVSMEELKKV VLSQGDKLLM EAANPSPFYM INGSSAMVDH FEIERKPSEI
201: HGNVHNFGYG QGFF

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.