Factsheet for VIT_03s0088g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_14s0060g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24840.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G24840.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G24840.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT2G24840.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT2G24840.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G24840.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G24840.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT2G24840.1	VIT_14s0060g00300.t01	AT5G48670.1	18599653
AT2G24840.1	VIT_14s0060g00300.t01	AT5G48670.1	18713950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0088g00590.t01	Wine grape	nucleus	73.06	74.77
VIT_01s0010g01500.t01	Wine grape	nucleus	26.48	56.31
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	52.97	52.49
Solyc01g106710.1.1	Tomato	nucleus	52.51	52.04
VIT_03s0088g00550.t01	Wine grape	nucleus	49.32	50.7
CDY36151	Canola	nucleus	20.09	50.0
PGSC0003DMT400094062	Potato	nucleus	45.66	49.02
VIT_01s0010g01530.t01	Wine grape	nucleus	43.38	48.97
KRG91150	Soybean	nucleus	49.77	48.23
VIT_03s0088g00510.t01	Wine grape	nucleus	47.95	46.88
VIT_03s0088g00600.t01	Wine grape	nucleus	45.66	46.73
KRH35626	Soybean	nucleus	47.95	46.46
CDX81713	Canola	nucleus	28.77	38.89
Bra032057.1-P	Field mustard	nucleus	31.51	38.33
CDY55987	Canola	nucleus	29.22	38.1
Bra026764.1-P	Field mustard	nucleus	29.22	38.1
Bra007829.1-P	Field mustard	nucleus	32.88	34.78
VIT_00s0386g00010.t01	Wine grape	nucleus	31.96	34.48
VIT_07s0005g06590.t01	Wine grape	nucleus	29.68	30.95
VIT_10s0003g03970.t01	Wine grape	nucleus	29.68	30.95
AT2G24840.1	Thale cress	nucleus	36.53	30.3
GSMUA_Achr5P01940_001	Banana	nucleus	29.22	26.23
GSMUA_Achr4P28260_001	Banana	nucleus	26.94	23.98
CDY34751	Canola	cytosol	11.87	23.01
CDX76788	Canola	cytosol	11.42	22.12
GSMUA_Achr5P01990_001	Banana	nucleus	32.88	20.75
CDY36150	Canola	cytosol	5.48	20.69
CDY45604	Canola	cytosol	5.02	18.97

Protein Annotations

EntrezGene:100263465	wikigene:100263465	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI25110	ProteinID:CBI25110.3
ncoils:Coil	UniProt:D7T3M9	EMBL:FN595512	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EntrezGene:LOC100263465	wikigene:LOC100263465
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001982F24	ArrayExpress:VIT_03s0088g00610	EnsemblPlantsGene:VIT_03s0088g00610
EnsemblPlants:VIT_03s0088g00610.t01	RefSeq:XP_002270816	RefSeq:XP_002270816.1	:	:	:

Description

No Description!

Coordinates

chr3:+:8820035..8820694

Molecular Weight (calculated)

24662.9 Da

IEP (calculated)

8.829

GRAVY (calculated)

-0.214

Length

219 amino acids

Sequence
(BLAST)

001: MVEKSSKGRQ KIEIAKIPKK NHLQVTFSKR KSGLFKKASE LCTLCGANIA ILVFSPGGKV FSFGHPDVRY IVYSFFANIP PTKRSDLNLI EAHDQNASIH
101: KLNLQLAEVL NQLEAEKKRG EILGQIRASQ GQCWWEAPID ELSLFELQQL KVSMEELKKI VVSQAELLLM EGNANPSTFN KVNGYPMVDD FEFERKLSEI
201: HGLSIVPHVH NFGHGLGFF

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.