Factsheet for Bra007829.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra009911.1-P
Bra018296.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra029469.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24840.1	Bra009911.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020524.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020525.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020550.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020552.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra009911.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020524.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020525.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020550.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020552.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra009911.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020524.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020525.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020550.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020552.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra000214.1-P	AT2G41090.1	17360592
AT2G24840.1	Bra000214.1-P	AT2G41100.1	17360592
AT2G24840.1	Bra018296.1-P	AT3G51920.1	17360592
AT2G24840.1	Bra033467.1-P	AT3G51920.1	17360592
AT2G24840.1	Bra039723.1-P	AT4G14640.1	17360592
AT2G24840.1	Bra002368.1-P	AT5G21274.1	17360592
AT2G24840.1	Bra006595.1-P	AT5G21274.1	17360592
AT2G24840.1	Bra029469.1-P	AT5G48670.1	18599653
AT2G24840.1	Bra029469.1-P	AT5G48670.1	18713950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34751	Canola	cytosol	54.59	100.0
CDX76788	Canola	cytosol	51.69	94.69
CDY36151	Canola	nucleus	34.3	80.68
Bra032057.1-P	Field mustard	nucleus	62.32	71.67
CDY36150	Canola	cytosol	16.43	58.62
CDY45604	Canola	cytosol	16.43	58.62
AT2G24840.1	Thale cress	nucleus	73.43	57.58
Bra026764.1-P	Field mustard	nucleus	41.55	51.19
PGSC0003DMT400094062	Potato	nucleus	41.55	42.16
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	42.03	39.37
KRG91150	Soybean	nucleus	42.03	38.5
VIT_03s0088g00590.t01	Wine grape	nucleus	39.13	37.85
KRH35626	Soybean	nucleus	40.1	36.73
VIT_03s0088g00610.t01	Wine grape	cytosol	34.78	32.88
Bra011938.1-P	Field mustard	nucleus	34.78	30.25
Bra021910.1-P	Field mustard	nucleus	26.09	29.67
Solyc04g025970.1.1	Tomato	cytosol, nucleus, peroxisome	16.43	29.06
Bra022434.1-P	Field mustard	nucleus	39.61	28.98
Bra001209.1-P	Field mustard	nucleus	24.64	28.49
Bra038225.1-P	Field mustard	nucleus	35.27	27.97
Bra002480.1-P	Field mustard	nucleus	35.27	26.16
Bra020242.1-P	Field mustard	nucleus	29.47	24.6
Bra032347.1-P	Field mustard	nucleus	21.26	23.66
Bra020247.1-P	Field mustard	cytosol	30.43	23.42
Bra026674.1-P	Field mustard	nucleus	22.71	22.82
GSMUA_Achr5P01940_001	Banana	nucleus	26.09	22.13
Bra035685.1-P	Field mustard	nucleus	30.92	21.84
Bra003884.1-P	Field mustard	cytosol	22.22	21.7
GSMUA_Achr4P28260_001	Banana	nucleus	24.64	20.73
Bra022446.1-P	Field mustard	cytosol	14.98	15.82
GSMUA_Achr5P01990_001	Banana	nucleus	23.19	13.83
Bra020246.1-P	Field mustard	cytosol	10.14	12.35
Bra020245.1-P	Field mustard	nucleus	7.73	11.43

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra007829	EnsemblPlants:Bra007829.1	EnsemblPlants:Bra007829.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:M4CUD5	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0002542D0F	:	:	:	:

Description

AT2G24840 (E=9e-082) AGL61, DIA | AGL61 (AGAMOUS-LIKE 61); DNA binding / transcription factor

Coordinates

chrA09:-:31137152..31137775

Molecular Weight (calculated)

23136.0 Da

IEP (calculated)

9.621

GRAVY (calculated)

-0.423

Length

207 amino acids

Sequence
(BLAST)

001: MGRQRIPMVK IKKETHRQVT FSKRRAGLFK KASELCTLCG AEIGIIVYSP AKKPFSFGHP SVESVLDRYL SRNDLSLAQT KKPQGNTAGN CELNMLLTQT
101: VSEVEEEKKK GQAMAETRKG NAARRLVTSW WEGPVDEMNM VQLQVMKCAL EELRKIVVSE TNTVPFKEVK EDVFGFLDAN KVTAPSYMNT SSGLSNAYHF
201: GYGNGCF

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.