Factsheet for Bra029469.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra002480.1-P
Bra006595.1-P
Bra007829.1-P
Bra018296.1-P
Bra020242.1-P
Bra020245.1-P
Bra020246.1-P
Bra020247.1-P
Bra032057.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48670.1	Bra007829.1-P	AT2G24840.1	18599653
AT5G48670.1	Bra032057.1-P	AT2G24840.1	18599653
AT5G48670.1	Bra007829.1-P	AT2G24840.1	18713950
AT5G48670.1	Bra032057.1-P	AT2G24840.1	18713950
AT5G48670.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G48670.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G48670.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G48670.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G48670.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G48670.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G48670.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G48670.1	Bra002480.1-P	AT5G60440.1	15805477
AT5G48670.1	Bra020242.1-P	AT5G60440.1	15805477
AT5G48670.1	Bra020245.1-P	AT5G60440.1	15805477
AT5G48670.1	Bra020246.1-P	AT5G60440.1	15805477
AT5G48670.1	Bra020247.1-P	AT5G60440.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60402	Canola	nucleus	100.0	100.0
Bra018490.1-P	Field mustard	nucleus	76.64	80.34
GSMUA_Achr2P18410_001	Banana	nucleus	10.2	75.61
AT5G27810.1	Thale cress	cytosol, nucleus, plastid	25.33	64.71
AT5G48670.1	Thale cress	nucleus	67.43	63.86
VIT_14s0060g00300.t01	Wine grape	nucleus	45.07	58.05
KRG89836	Soybean	nucleus	25.66	52.35
Solyc01g102260.2.1	Tomato	nucleus	42.43	51.81
KRH30919	Soybean	nucleus	41.12	51.65
KRG97962	Soybean	nucleus	40.46	51.46
KRG88863	Soybean	mitochondrion, nucleus	23.68	51.43
Bra005166.1-P	Field mustard	mitochondrion, nucleus	18.75	45.6
KRG98152	Soybean	nucleus	28.29	45.26
Bra020555.1-P	Field mustard	nucleus	31.58	44.44
KRG98149	Soybean	nucleus	30.92	44.13
KRH72060	Soybean	nucleus	24.67	43.86
KRG98150	Soybean	mitochondrion, nucleus	23.68	43.11
KRH30119	Soybean	cytosol	22.7	42.86
KRH30113	Soybean	nucleus	24.01	42.69
KRH30473	Soybean	mitochondrion, nucleus	30.92	42.53
KRH30476	Soybean	nucleus	20.07	40.67
KRH66114	Soybean	nucleus	25.99	39.9
KRG98142	Soybean	nucleus	34.87	39.7
GSMUA_Achr3P05500_001	Banana	nucleus	28.62	39.37
Bra009913.1-P	Field mustard	nucleus	25.99	38.92
HORVU6Hr1G003730.1	Barley	nucleus	10.86	38.82
KRH30472	Soybean	nucleus	26.97	38.68
GSMUA_Achr2P18400_001	Banana	nucleus	28.95	37.93
TraesCS6A01G020500.1	Wheat	mitochondrion, nucleus	19.41	37.82
GSMUA_Achr3P08500_001	Banana	nucleus	28.29	37.39
KRG98148	Soybean	nucleus	27.96	37.12
TraesCS3D01G138400.1	Wheat	cytosol	23.03	36.84
KRG98143	Soybean	nucleus	25.0	36.02
KRH66052	Soybean	mitochondrion, nucleus	26.32	35.56
Bra041022.1-P	Field mustard	nucleus	38.82	35.33
GSMUA_AchrUn_...	Banana	nucleus	26.97	35.19
Bra024521.1-P	Field mustard	mitochondrion	18.75	35.19
TraesCS3B01G155200.1	Wheat	cytosol	22.37	34.87
Bra012335.1-P	Field mustard	mitochondrion	18.42	34.57
GSMUA_Achr3P24560_001	Banana	nucleus	25.99	34.05
TraesCS3A01G137500.1	Wheat	cytosol	21.71	33.17
KRG98147	Soybean	mitochondrion, nucleus	27.96	33.07
TraesCS7B01G484600.1	Wheat	nucleus	17.43	32.32
KRG88915	Soybean	mitochondrion, nucleus	21.71	31.88
TraesCS6D01G024000.1	Wheat	mitochondrion, nucleus	19.08	31.52
KXG28892	Sorghum	nucleus	19.08	31.35
OQU83806	Sorghum	nucleus	17.76	30.86
TraesCS6B01G028100.1	Wheat	mitochondrion	19.08	30.85
GSMUA_Achr8P06150_001	Banana	nucleus	24.67	30.61
HORVU7Hr1G121600.1	Barley	nucleus	18.42	30.27
TraesCS7D01G548500.1	Wheat	plastid	23.36	30.21
KRH72066	Soybean	mitochondrion, nucleus	20.39	30.1
TraesCS7A01G561000.1	Wheat	nucleus	23.03	29.91
TraesCS7B01G485400.1	Wheat	nucleus	22.7	29.49
KXG28893	Sorghum	nucleus	16.12	29.17
Os03t0582400-01	Rice	nucleus	23.68	28.92
Bra039404.1-P	Field mustard	nucleus	28.62	28.81
TraesCS3A01G312600.1	Wheat	nucleus	23.68	28.69
TraesCS7B01G484000.1	Wheat	nucleus	17.43	28.65
EES06917	Sorghum	mitochondrion, nucleus	24.34	28.57
TraesCS7A01G559500.1	Wheat	nucleus	17.76	28.27
Zm00001d016791_P001	Maize	mitochondrion	26.64	28.22
EES10067	Sorghum	mitochondrion	19.08	28.16
TraesCS7D01G550500.1	Wheat	nucleus	17.11	28.11
Zm00001d013792_P001	Maize	mitochondrion, nucleus	25.66	28.06
TraesCS6A01G020900.1	Wheat	mitochondrion	19.41	27.96
TraesCS3B01G159600.1	Wheat	nucleus	23.03	27.89
TraesCS6B01G027900.1	Wheat	nucleus	20.72	27.75
Bra035448.1-P	Field mustard	nucleus	24.01	27.65
Bra035449.1-P	Field mustard	nucleus	24.01	27.65
TraesCS6D01G023800.1	Wheat	mitochondrion	20.39	27.31
TraesCS6B01G028300.1	Wheat	mitochondrion	18.75	27.01
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	23.03	26.92
TraesCS6D01G342100.1	Wheat	mitochondrion	23.03	26.82
TraesCS2B01G171700.1	Wheat	mitochondrion	16.78	26.7
TraesCS6A01G359100.1	Wheat	mitochondrion	22.7	26.44
TraesCS6B01G391800.1	Wheat	mitochondrion	22.7	26.44
OQU83804	Sorghum	mitochondrion	20.39	26.38
KRH30471	Soybean	nucleus	25.99	26.07
KXG28888	Sorghum	nucleus	21.71	25.88
KXG28890	Sorghum	mitochondrion	21.71	25.88
HORVU6Hr1G085540.1	Barley	mitochondrion	19.41	25.76
TraesCS6B01G391600.1	Wheat	nucleus	20.72	25.71
TraesCS6B01G391700.1	Wheat	nucleus	20.72	25.71
KXG28889	Sorghum	nucleus	21.05	25.6
TraesCS6D01G342000.1	Wheat	nucleus	20.07	25.31
KXG32310	Sorghum	nucleus	20.07	25.21
KXG38099	Sorghum	plastid	25.99	25.08
KRG98146	Soybean	nucleus	26.97	25.0
TraesCS6D01G341700.1	Wheat	nucleus	19.74	24.9
KRG88862	Soybean	nucleus	25.33	24.6
TraesCS7D01G551000.1	Wheat	nucleus	19.08	24.58
TraesCS7B01G484100.1	Wheat	mitochondrion, nucleus	19.41	24.48
HORVU2Hr1G022060.1	Barley	nucleus, plastid	16.45	24.39
Zm00001d048894_P001	Maize	mitochondrion	19.74	24.29
TraesCS6A01G022700.1	Wheat	mitochondrion	18.09	24.23
TraesCS6D01G024300.1	Wheat	mitochondrion	18.09	24.23
TraesCS6A01G358900.1	Wheat	nucleus	18.75	24.15
TraesCS7D01G550600.1	Wheat	nucleus	18.75	23.65
TraesCS2D01G128000.1	Wheat	nucleus	16.45	23.58
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	19.08	23.39
KRG88914	Soybean	cytosol	16.78	23.29
EER91288	Sorghum	mitochondrion, nucleus	24.01	23.25
TraesCS7B01G484500.1	Wheat	nucleus	18.42	23.24
Bra040248.1-P	Field mustard	nucleus	29.61	21.79
TraesCS6A01G359700.1	Wheat	nucleus	16.12	21.59
Bra009911.1-P	Field mustard	mitochondrion, nucleus	25.33	21.15
Bra020552.1-P	Field mustard	nucleus	22.7	20.23
TraesCS7D01G536700.1	Wheat	nucleus	20.07	19.49
Bra020550.1-P	Field mustard	nucleus	24.01	19.21
TraesCS7A01G551000.1	Wheat	nucleus	19.74	19.17
Bra020525.1-P	Field mustard	nucleus	23.68	18.23
TraesCS7B01G299400.1	Wheat	nucleus	19.08	17.96
TraesCS6D01G342700.1	Wheat	nucleus	17.43	17.15
TraesCS7A01G398800.1	Wheat	nucleus	18.09	17.08
TraesCS7D01G393000.1	Wheat	nucleus	17.76	16.72
TraesCS6B01G392600.1	Wheat	nucleus	16.78	16.45
TraesCS2D01G150900.1	Wheat	mitochondrion	15.79	15.64
HORVU6Hr1G085670.1	Barley	nucleus	16.78	15.36
Bra020524.1-P	Field mustard	nucleus	17.76	15.0
TraesCS2A01G146400.1	Wheat	mitochondrion	16.78	14.33
TraesCS2B01G146100.1	Wheat	nucleus	16.45	13.77

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra029469	EnsemblPlants:Bra029469.1	EnsemblPlants:Bra029469.1-P	ncoils:Coil
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4EL02
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF355
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000254277D	SEG:seg

Description

AT5G48670 (E=3e-073) FEM111, AGL80 | AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor

Coordinates

chrA09:+:17797024..17797938

Molecular Weight (calculated)

34484.0 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.717

Length

304 amino acids

Sequence
(BLAST)

001: MTRKKVKLAF IANDSSRKAT FKKRKKGLIK KVNELSTLCG INACAIIYSP YDTNPEVWPS NSGVQRIISD FRKLPEMDQN KKMVDQEAFL RQRIAKASEN
101: LKKQRKDNRE MEMTEVMFQC LVGNMGMFNL NIMDLNDLGY MIDQYLKDVN RRIEILGSSG GGMELGETSN DAAAAPSEAA GTLAIVPTTT DTIQPYHHQQ
201: QHQMFRHHAA PHVGPYEQPL NLNLSHSQNQ QQGFTEMMMN RPEQMSYAAE QMGFPFMNDN HHHHHYHHHQ QVPGESSTTP ATNVSASSAN PVTSSNPTNH
301: IWFR

Best Arabidopsis Sequence Match ( AT5G48670.1 )
(BLAST)

001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H

Arabidopsis Description

AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.