Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra011938.1-P | |
| Bra035685.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05860.1 | Bra011938.1-P | AT4G36590.1 | 15805477 |
| AT3G05860.1 | Bra035685.1-P | AT4G36590.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27735 | Canola | nucleus | 88.08 | 99.63 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 50.66 | 93.86 |
| AT3G05860.1 | Thale cress | nucleus | 53.64 | 62.31 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 7.28 | 53.66 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 20.2 | 48.8 |
| Bra035448.1-P | Field mustard | nucleus | 31.46 | 35.98 |
| Bra035449.1-P | Field mustard | nucleus | 31.13 | 35.61 |
| Bra009913.1-P | Field mustard | nucleus | 21.52 | 32.02 |
| Bra040248.1-P | Field mustard | nucleus | 43.05 | 31.48 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 8.61 | 30.59 |
| Bra020555.1-P | Field mustard | nucleus | 21.85 | 30.56 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 18.54 | 29.47 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 18.87 | 29.23 |
| Bra018490.1-P | Field mustard | nucleus | 27.81 | 28.97 |
| Bra029469.1-P | Field mustard | nucleus | 28.81 | 28.62 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 18.54 | 28.14 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 20.53 | 28.05 |
| OQU83806 | Sorghum | nucleus | 16.23 | 28.0 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 22.52 | 27.76 |
| KXG28892 | Sorghum | nucleus | 16.89 | 27.57 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 20.86 | 27.16 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 20.86 | 27.16 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 16.56 | 27.03 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 20.53 | 26.96 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 13.91 | 26.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.53 | 26.61 |
| Bra012335.1-P | Field mustard | mitochondrion | 14.24 | 26.54 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 17.88 | 26.34 |
| KXG28893 | Sorghum | nucleus | 14.57 | 26.19 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 19.87 | 25.64 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 15.56 | 25.54 |
| TraesCS7D01G548500.1 | Wheat | plastid | 19.87 | 25.53 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 15.89 | 25.13 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 17.55 | 25.12 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 13.58 | 25.0 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 15.23 | 24.86 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 19.21 | 24.79 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 20.53 | 24.7 |
| Os03t0582400-01 | Rice | nucleus | 20.2 | 24.5 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 14.9 | 24.32 |
| EES10067 | Sorghum | mitochondrion | 16.56 | 24.27 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 22.19 | 24.1 |
| Bra024521.1-P | Field mustard | mitochondrion | 12.91 | 24.07 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 19.21 | 24.07 |
| KXG32310 | Sorghum | nucleus | 19.21 | 23.97 |
| EES06917 | Sorghum | mitochondrion, nucleus | 20.53 | 23.94 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 19.87 | 23.9 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 19.21 | 23.67 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 19.21 | 23.67 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 18.87 | 23.65 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 18.54 | 23.24 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 16.23 | 23.22 |
| Zm00001d016791_P001 | Maize | mitochondrion | 21.85 | 23.0 |
| OQU83804 | Sorghum | mitochondrion | 17.88 | 22.98 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 17.88 | 22.88 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 14.24 | 22.87 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 17.22 | 22.71 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 15.89 | 22.64 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 16.89 | 22.47 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 16.89 | 22.47 |
| Bra041022.1-P | Field mustard | nucleus | 24.83 | 22.46 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 17.88 | 22.41 |
| Zm00001d048894_P001 | Maize | mitochondrion | 18.21 | 22.27 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 19.21 | 22.22 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 17.22 | 22.03 |
| KXG28889 | Sorghum | nucleus | 18.21 | 22.0 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 13.91 | 21.99 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 18.87 | 21.84 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 18.87 | 21.84 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 17.88 | 21.77 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 16.23 | 21.59 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 17.22 | 21.58 |
| KXG28890 | Sorghum | mitochondrion | 18.21 | 21.57 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 18.54 | 21.54 |
| PGSC0003DMT400003073 | Potato | cytosol | 7.62 | 21.3 |
| KXG28888 | Sorghum | nucleus | 17.88 | 21.18 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 15.89 | 21.15 |
| KXG38099 | Sorghum | plastid | 21.19 | 20.32 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 15.23 | 20.26 |
| EER91288 | Sorghum | mitochondrion, nucleus | 20.2 | 19.43 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 22.52 | 18.68 |
| Bra020552.1-P | Field mustard | nucleus | 20.53 | 18.18 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 17.88 | 17.25 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 18.21 | 17.03 |
| Bra020525.1-P | Field mustard | nucleus | 22.19 | 16.96 |
| Bra020550.1-P | Field mustard | nucleus | 21.19 | 16.84 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 17.55 | 16.41 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 16.89 | 16.29 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 16.56 | 16.29 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 17.22 | 16.15 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 15.89 | 15.53 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 15.89 | 15.48 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 16.23 | 14.76 |
| Bra020524.1-P | Field mustard | nucleus | 17.55 | 14.72 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 17.55 | 14.6 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 16.56 | 14.04 |
| PGSC0003DMT400089615 | Potato | cytosol | 3.31 | 4.2 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EnsemblPlantsGene:Bra039404 | EnsemblPlants:Bra039404.1 | EnsemblPlants:Bra039404.1-P | GO:GO:0000982 |
| GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M4FE83 | InterPro:MADS_SRF-like |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002548194 | : | : |
Description
AT3G05860 (E=1e-070) | MADS-box protein (AGL45)
Coordinates
chrA05:+:23208829..23209737
Molecular Weight (calculated)
34959.9 Da
IEP (calculated)
6.914
GRAVY (calculated)
-0.917
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRKKLNISY ITNDSMRKST FNKRKKGFFK KIHELSVLCG IQACAVIYSP FSSTPDVWPS NSEAKKVVEK FEEIPKIDQE KKMVNHEGFL RDSITKTRET
101: TIKKMMDNTE SAMNETMFQF LRGRGDMFQL TDKHRDDLCR HIDQHLKELY HHRKLILNQS HLEYGESSSA ANAMTQPAAI AEEGSSPFPD PDAFNTAQPV
201: NELWALENNY PPAASDQQGY YQMTNPVGGY HQHPSLNLNF NPNQYQQKFV GYPNVAQDGN YSGIQNQNHQ QEEWLVSQMI NNSNQVRFPM MDDNNRYNYD
301: QP
101: TIKKMMDNTE SAMNETMFQF LRGRGDMFQL TDKHRDDLCR HIDQHLKELY HHRKLILNQS HLEYGESSSA ANAMTQPAAI AEEGSSPFPD PDAFNTAQPV
201: NELWALENNY PPAASDQQGY YQMTNPVGGY HQHPSLNLNF NPNQYQQKFV GYPNVAQDGN YSGIQNQNHQ QEEWLVSQMI NNSNQVRFPM MDDNNRYNYD
301: QP
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
Arabidopsis Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.