Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05860.1 | CDY04574 | AT4G36590.1 | 15805477 |
| AT3G05860.1 | CDY15761 | AT4G36590.1 | 15805477 |
| AT3G05860.1 | CDY31718 | AT4G36590.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 57.68 | 94.48 |
| Bra039404.1-P | Field mustard | nucleus | 99.63 | 88.08 |
| AT3G05860.1 | Thale cress | nucleus | 60.67 | 62.31 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 8.24 | 53.66 |
| CDY64992 | Canola | mitochondrion, nucleus | 27.34 | 47.4 |
| CDY33537 | Canola | nucleus | 28.09 | 38.27 |
| CDY38696 | Canola | nucleus | 37.83 | 36.33 |
| CDY18830 | Canola | nucleus | 43.07 | 33.43 |
| CDX80580 | Canola | nucleus | 24.34 | 32.18 |
| CDX88234 | Canola | nucleus | 21.72 | 31.69 |
| CDY71896 | Canola | nucleus | 19.85 | 30.81 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 9.74 | 30.59 |
| CDY05540 | Canola | nucleus | 24.34 | 30.09 |
| CDY25000 | Canola | nucleus | 24.34 | 30.09 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 20.97 | 29.47 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 21.35 | 29.23 |
| CDX97329 | Canola | nucleus | 31.09 | 28.62 |
| CDY60402 | Canola | nucleus | 32.58 | 28.62 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 20.97 | 28.14 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 23.22 | 28.05 |
| OQU83806 | Sorghum | nucleus | 17.98 | 27.43 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 25.09 | 27.35 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 23.6 | 27.16 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 23.6 | 27.16 |
| KXG28892 | Sorghum | nucleus | 18.73 | 27.03 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 23.22 | 26.96 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 15.73 | 26.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.22 | 26.61 |
| CDY25744 | Canola | mitochondrion | 16.1 | 26.54 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 18.35 | 26.49 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 20.22 | 26.34 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 22.47 | 25.64 |
| KXG28893 | Sorghum | nucleus | 16.1 | 25.6 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 17.6 | 25.54 |
| TraesCS7D01G548500.1 | Wheat | plastid | 22.47 | 25.53 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 17.98 | 25.13 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 19.85 | 25.12 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 21.72 | 24.79 |
| Os03t0582400-01 | Rice | nucleus | 22.85 | 24.5 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 14.98 | 24.39 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 16.85 | 24.32 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 22.85 | 24.3 |
| CDY04801 | Canola | mitochondrion, nucleus | 14.61 | 24.07 |
| CDY21372 | Canola | mitochondrion | 14.61 | 24.07 |
| KXG32310 | Sorghum | nucleus | 21.72 | 23.97 |
| EES06917 | Sorghum | mitochondrion, nucleus | 23.22 | 23.94 |
| EES10067 | Sorghum | mitochondrion | 18.35 | 23.79 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 16.48 | 23.78 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 24.72 | 23.74 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 21.35 | 23.65 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 22.1 | 23.51 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 21.35 | 23.27 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 21.35 | 23.27 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 20.97 | 23.24 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 18.35 | 23.22 |
| OQU83804 | Sorghum | mitochondrion | 20.22 | 22.98 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 16.1 | 22.87 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 20.6 | 22.82 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 17.98 | 22.64 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 19.1 | 22.47 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 19.1 | 22.47 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 19.85 | 22.46 |
| CDY05207 | Canola | nucleus | 28.09 | 22.46 |
| Zm00001d016791_P001 | Maize | mitochondrion | 23.97 | 22.3 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 19.1 | 22.27 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 21.72 | 22.22 |
| CDX88231 | Canola | nucleus | 22.85 | 22.1 |
| CDY27734 | Canola | nucleus | 27.72 | 22.02 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 19.85 | 21.99 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 15.73 | 21.99 |
| CDX80577 | Canola | mitochondrion, nucleus | 24.72 | 21.93 |
| Zm00001d048894_P001 | Maize | mitochondrion | 20.22 | 21.86 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 21.35 | 21.84 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 21.35 | 21.84 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 19.1 | 21.61 |
| KXG28889 | Sorghum | nucleus | 20.22 | 21.6 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 18.35 | 21.59 |
| KXG28890 | Sorghum | mitochondrion | 20.6 | 21.57 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 20.97 | 21.54 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 19.85 | 21.37 |
| PGSC0003DMT400003073 | Potato | cytosol | 8.61 | 21.3 |
| KXG28888 | Sorghum | nucleus | 20.22 | 21.18 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 19.1 | 21.16 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 17.98 | 21.15 |
| KXG38099 | Sorghum | plastid | 22.85 | 19.37 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 16.1 | 18.94 |
| EER91288 | Sorghum | mitochondrion, nucleus | 22.1 | 18.79 |
| CDY71564 | Canola | nucleus | 23.22 | 18.29 |
| CDY05515 | Canola | nucleus | 25.47 | 18.04 |
| CDY05333 | Canola | nucleus | 24.72 | 17.51 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 19.85 | 16.93 |
| CDY70782 | Canola | nucleus | 19.85 | 16.41 |
| CDY67043 | Canola | nucleus | 23.97 | 16.37 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 18.73 | 16.29 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 19.48 | 16.1 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 18.73 | 15.97 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 19.1 | 15.79 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 18.73 | 15.53 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 17.23 | 14.89 |
| CDY05514 | Canola | nucleus | 19.85 | 14.72 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 19.85 | 14.6 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 16.85 | 14.52 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 17.6 | 14.16 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 18.73 | 14.04 |
| PGSC0003DMT400089615 | Potato | cytosol | 3.75 | 4.2 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GME9 | UniProt:A0A078GME9 | EnsemblPlants:CDY27735 | ProteinID:CDY27735 |
| ProteinID:CDY27735.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00038536001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EECCD0 |
Description
BnaA05g31440DBnaA05g31440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GME9]
Coordinates
chrLK032209:+:175802..176796
Molecular Weight (calculated)
31210.9 Da
IEP (calculated)
8.714
GRAVY (calculated)
-0.920
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRKKLNISY ITNDSMRKST FNKRKKGFFK KIHELSVLCG IQACAVIYSP FSSTPDVWPS NSEAKKVVEK FEEIPKIDQE KKMVNHEGFL RDSITKTRET
101: TIKKMMDNTE SAMNETMFQF LRGRGDMFQL TDKHRDDLCR HIDQHLKELY HHRKLILNQS HLEYGESSSA ANAMTQPAAI AEEGYYQMTN PVGGYHQHPS
201: LNLNFNPNQY QQKFVGYPNV AQDGNYSGIQ NQNHQQEEWL VSQMINNSNQ VRFPMMDDNN RYNYHQP
101: TIKKMMDNTE SAMNETMFQF LRGRGDMFQL TDKHRDDLCR HIDQHLKELY HHRKLILNQS HLEYGESSSA ANAMTQPAAI AEEGYYQMTN PVGGYHQHPS
201: LNLNFNPNQY QQKFVGYPNV AQDGNYSGIQ NQNHQQEEWL VSQMINNSNQ VRFPMMDDNN RYNYHQP
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
Arabidopsis Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.