Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04574 | Canola | nucleus | 91.48 | 85.71 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 13.9 | 55.36 |
| CDY31718 | Canola | nucleus | 58.3 | 54.39 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 20.63 | 44.66 |
| CDY36151 | Canola | nucleus | 16.59 | 42.05 |
| KRH22644 | Soybean | nucleus | 24.22 | 38.85 |
| CDY69485 | Canola | nucleus | 20.63 | 37.1 |
| CDY71457 | Canola | nucleus | 20.63 | 37.1 |
| PGSC0003DMT400013136 | Potato | nucleus | 32.29 | 36.55 |
| CDX81713 | Canola | nucleus | 25.11 | 34.57 |
| CDY55987 | Canola | nucleus | 26.01 | 34.52 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 31.84 | 33.33 |
| KRH72042 | Soybean | extracellular | 15.25 | 33.01 |
| KRH32916 | Soybean | nucleus | 25.56 | 32.95 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 31.39 | 32.71 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 32.74 | 32.59 |
| KRH72149 | Soybean | mitochondrion | 24.66 | 32.54 |
| KRH32912 | Soybean | nucleus | 25.11 | 32.37 |
| KRH32901 | Soybean | nucleus | 25.11 | 32.37 |
| KRH32915 | Soybean | nucleus | 24.66 | 31.79 |
| KRH32909 | Soybean | nucleus | 24.66 | 31.79 |
| KRH32946 | Soybean | nucleus | 24.66 | 31.79 |
| KRG88448 | Soybean | nucleus | 24.66 | 31.79 |
| KRH32910 | Soybean | nucleus | 25.11 | 31.46 |
| AT4G36590.1 | Thale cress | nucleus | 34.98 | 31.45 |
| KRH32904 | Soybean | nucleus | 24.22 | 31.21 |
| KRH32917 | Soybean | nucleus | 24.66 | 30.9 |
| KRH32900 | Soybean | nucleus | 23.77 | 30.64 |
| KRG91148 | Soybean | nucleus | 33.18 | 30.58 |
| AT1G65360.1 | Thale cress | nucleus | 30.94 | 30.53 |
| KRH33030 | Soybean | nucleus | 15.25 | 30.09 |
| KRG91149 | Soybean | mitochondrion | 31.84 | 29.34 |
| KRG91147 | Soybean | nucleus | 31.39 | 29.29 |
| CDX95426 | Canola | nucleus | 35.87 | 28.99 |
| CDY42198 | Canola | nucleus | 35.87 | 28.99 |
| KRH35628 | Soybean | nucleus | 31.84 | 28.74 |
| CDY24623 | Canola | nucleus | 36.32 | 28.62 |
| CDY46165 | Canola | nucleus | 36.32 | 28.62 |
| CDY09199 | Canola | nucleus | 31.39 | 28.23 |
| CDY28567 | Canola | mitochondrion, nucleus | 30.94 | 27.82 |
| CDY09204 | Canola | nucleus | 30.94 | 27.71 |
| CDY61930 | Canola | nucleus | 34.53 | 27.6 |
| KRH35627 | Soybean | mitochondrion | 30.49 | 27.53 |
| KRH28025 | Soybean | nucleus | 20.63 | 27.38 |
| CDY31547 | Canola | nucleus | 34.08 | 27.24 |
| KRH32873 | Soybean | nucleus | 26.01 | 26.73 |
| KRH71935 | Soybean | nucleus | 21.08 | 26.55 |
| CDY09205 | Canola | nucleus | 31.84 | 25.27 |
| AT1G01530.1 | Thale cress | nucleus | 27.8 | 25.1 |
| CDY57614 | Canola | nucleus | 17.94 | 22.35 |
| CDX74094 | Canola | nucleus | 17.94 | 22.35 |
| KRH72146 | Soybean | nucleus | 18.39 | 21.58 |
| KRH35629 | Soybean | nucleus | 19.28 | 20.38 |
| CDY34751 | Canola | cytosol | 10.31 | 20.35 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 21.97 | 19.92 |
| CDX76788 | Canola | cytosol | 9.87 | 19.47 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 20.63 | 18.85 |
| CDY51695 | Canola | cytosol | 15.7 | 17.86 |
| CDY26304 | Canola | nucleus | 14.8 | 17.84 |
| CDX99867 | Canola | nucleus | 15.25 | 17.53 |
| CDX72908 | Canola | nucleus | 16.59 | 17.37 |
| CDY36150 | Canola | cytosol | 4.48 | 17.24 |
| KRH32908 | Soybean | nucleus | 6.73 | 16.67 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 15.7 | 16.51 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 15.7 | 16.51 |
| CDY21751 | Canola | nucleus | 15.25 | 16.5 |
| CDX81816 | Canola | nucleus | 14.8 | 16.02 |
| CDY45604 | Canola | cytosol | 4.04 | 15.52 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 23.77 | 15.27 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FRI9 | UniProt:A0A078FRI9 | EnsemblPlants:CDY15761 | ProteinID:CDY15761 |
| ProteinID:CDY15761.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00090015001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EBDCFF | : | : | : | : |
Description
BnaC04g15630DBnaC04g15630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRI9]
Coordinates
chrLK032057:+:379378..380833
Molecular Weight (calculated)
25484.2 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.707
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDANLQVT FSKRRQGLFK KASELCTLCN VGMGVIVFSP GQKVFSFGNP DVKSVIDNFK NHNHSPLLYT QDGLNPTIQN LNSLLTQELT ILEMEKKRKK
101: ELDEIKNKRE EIEKWWEKSP NQLDLSQNTC LTRALENLKM ELVSQRSQQL QAIDPPNYYG ESYNNIVGGG NVDLFDQTSM FDGNASNYNP NMIISNHGPM
201: VENNHKTNVF EAFRPRSNLN LPE
101: ELDEIKNKRE EIEKWWEKSP NQLDLSQNTC LTRALENLKM ELVSQRSQQL QAIDPPNYYG ESYNNIVGGG NVDLFDQTSM FDGNASNYNP NMIISNHGPM
201: VENNHKTNVF EAFRPRSNLN LPE
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.