Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26304 | Canola | nucleus | 90.21 | 94.59 |
| AT1G29962.1 | Thale cress | nucleus | 54.12 | 56.76 |
| AT1G28460.1 | Thale cress | nucleus | 52.06 | 55.49 |
| AT1G28450.1 | Thale cress | nucleus | 48.97 | 51.35 |
| AT1G54760.1 | Thale cress | nucleus | 39.18 | 47.2 |
| CDY36151 | Canola | nucleus | 19.59 | 43.18 |
| Solyc10g018070.1.1 | Tomato | nucleus | 20.62 | 33.61 |
| PGSC0003DMT400092871 | Potato | nucleus | 22.68 | 31.43 |
| CDY71457 | Canola | nucleus | 18.56 | 29.03 |
| CDY69485 | Canola | nucleus | 18.56 | 29.03 |
| CDX74094 | Canola | nucleus | 26.29 | 28.49 |
| CDY57614 | Canola | nucleus | 26.29 | 28.49 |
| Solyc10g018110.1.1 | Tomato | nucleus | 26.29 | 27.72 |
| Solyc10g018080.1.1 | Tomato | cytosol | 21.13 | 27.15 |
| PGSC0003DMT400087813 | Potato | nucleus | 25.26 | 26.92 |
| PGSC0003DMT400093117 | Potato | nucleus | 24.74 | 26.67 |
| Solyc04g056740.1.1 | Tomato | nucleus | 24.23 | 26.11 |
| Solyc03g033890.1.1 | Tomato | nucleus | 18.56 | 25.71 |
| Solyc01g097850.1.1 | Tomato | nucleus | 22.68 | 25.58 |
| PGSC0003DMT400091428 | Potato | nucleus | 22.68 | 25.58 |
| PGSC0003DMT400089966 | Potato | cytosol | 22.16 | 25.29 |
| Solyc04g056550.1.1 | Tomato | nucleus | 23.71 | 25.27 |
| Solyc06g059780.1.1 | Tomato | nucleus | 23.2 | 25.0 |
| PGSC0003DMT400091277 | Potato | nucleus | 23.2 | 25.0 |
| Solyc10g050900.1.1 | Tomato | nucleus | 21.65 | 24.85 |
| PGSC0003DMT400095957 | Potato | cytosol | 16.49 | 24.81 |
| Solyc03g033570.1.1 | Tomato | nucleus | 23.2 | 24.73 |
| CDX81713 | Canola | nucleus | 20.62 | 24.69 |
| PGSC0003DMT400095190 | Potato | nucleus | 22.68 | 24.44 |
| CDY55987 | Canola | nucleus | 21.13 | 24.4 |
| Solyc10g050950.1.1 | Tomato | nucleus | 20.1 | 24.22 |
| PGSC0003DMT400093319 | Potato | nucleus | 22.16 | 24.16 |
| PGSC0003DMT400090103 | Potato | nucleus | 22.16 | 24.16 |
| Solyc03g033880.1.1 | Tomato | cytosol | 22.68 | 23.91 |
| PGSC0003DMT400094886 | Potato | nucleus | 22.16 | 23.89 |
| Solyc06g054680.1.1 | Tomato | nucleus | 22.16 | 23.89 |
| PGSC0003DMT400095980 | Potato | nucleus | 21.13 | 23.7 |
| PGSC0003DMT400088968 | Potato | nucleus | 13.4 | 23.64 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 29.9 | 23.58 |
| Solyc03g033940.1.1 | Tomato | nucleus | 22.68 | 23.4 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 29.38 | 23.36 |
| Solyc10g050940.1.1 | Tomato | nucleus | 20.1 | 23.08 |
| Solyc03g033900.1.1 | Tomato | nucleus | 21.65 | 22.95 |
| PGSC0003DMT400088611 | Potato | nucleus | 19.07 | 22.42 |
| PGSC0003DMT400094043 | Potato | cytosol | 17.01 | 22.15 |
| PGSC0003DMT400093647 | Potato | nucleus | 15.98 | 21.53 |
| Solyc03g034260.1.1 | Tomato | nucleus | 19.07 | 20.11 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 22.16 | 20.0 |
| CDY09199 | Canola | nucleus | 25.26 | 19.76 |
| PGSC0003DMT400097360 | Potato | cytosol | 13.4 | 19.7 |
| CDX72908 | Canola | nucleus | 21.13 | 19.25 |
| CDY28567 | Canola | mitochondrion, nucleus | 24.23 | 18.95 |
| PGSC0003DMT400095917 | Potato | cytosol | 12.89 | 18.94 |
| CDY21751 | Canola | nucleus | 20.1 | 18.93 |
| CDY09204 | Canola | nucleus | 24.23 | 18.88 |
| CDX81816 | Canola | nucleus | 19.59 | 18.45 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 20.1 | 18.4 |
| PGSC0003DMT400090655 | Potato | cytosol | 16.49 | 18.39 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 19.59 | 17.92 |
| CDY42198 | Canola | nucleus | 25.26 | 17.75 |
| CDX95426 | Canola | nucleus | 25.26 | 17.75 |
| CDY31718 | Canola | nucleus | 21.65 | 17.57 |
| CDY46165 | Canola | nucleus | 25.26 | 17.31 |
| CDY04574 | Canola | nucleus | 21.13 | 17.23 |
| CDY31547 | Canola | nucleus | 24.74 | 17.2 |
| CDY61930 | Canola | nucleus | 24.23 | 16.85 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 29.9 | 16.71 |
| CDY24623 | Canola | nucleus | 24.23 | 16.61 |
| CDY09205 | Canola | nucleus | 23.71 | 16.37 |
| Solyc03g033930.1.1 | Tomato | cytosol | 8.25 | 16.0 |
| CDY36150 | Canola | cytosol | 4.64 | 15.52 |
| CDY45604 | Canola | cytosol | 4.64 | 15.52 |
| CDY15761 | Canola | nucleus | 17.53 | 15.25 |
| PGSC0003DMT400097679 | Potato | cytosol | 9.79 | 14.84 |
| PGSC0003DMT400088010 | Potato | cytosol | 11.86 | 14.29 |
| PGSC0003DMT400027289 | Potato | cytosol | 8.76 | 13.18 |
| PGSC0003DMT400089582 | Potato | cytosol | 10.82 | 13.04 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 6.19 | 11.65 |
| CDX76788 | Canola | cytosol | 6.19 | 10.62 |
| CDY34751 | Canola | cytosol | 6.19 | 10.62 |
| Solyc06g065960.1.1 | Tomato | nucleus | 4.12 | 8.79 |
| CDY51695 | Canola | cytosol | 6.7 | 6.63 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EFL5 | EnsemblPlants:CDX99867 | ProteinID:CDX99867 | ProteinID:CDX99867.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00108592001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EBF7FC | SEG:seg | : | : | : |
Description
BnaC05g22890D
Coordinates
chrLK031914:+:681402..681986
Molecular Weight (calculated)
21718.6 Da
IEP (calculated)
7.549
GRAVY (calculated)
-0.688
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKKTKGRQ KIDIKKVTKN EDRMVTFSKR KNGIYTKLSE LSILCGADVG FLIYSGSGKP FTFGSPSFDD VAQRFLHGNH HSGIINGEGY SSSSLIVDAH
101: KKVKMDEFCK NLNNLMEIKT DAEEEKLKMA EAAYAPTLPV NSDASWKVDS KDDEEEKQLL RRYEEYYEEL CEVAAAKIRG RYDASASSSF PQHG
101: KKVKMDEFCK NLNNLMEIKT DAEEEKLKMA EAAYAPTLPV NSDASWKVDS KDDEEEKQLL RRYEEYYEEL CEVAAAKIRG RYDASASSSF PQHG
001: MKPKKTKGKQ RINIKKIEKD EDRLVTLSKR RNGIYTKLSE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNGEA SSSSSSSLQR SVMNAHQQAK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
Arabidopsis Description
AGL64AGAMOUS-like 64 [Source:UniProtKB/TrEMBL;Acc:Q7XJK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.