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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g050900.1.1 Tomato nucleus 90.53 90.53
Solyc10g050950.1.1 Tomato nucleus 81.66 85.71
PGSC0003DMT400093319 Potato nucleus 84.02 79.78
PGSC0003DMT400090103 Potato nucleus 81.07 76.97
Solyc04g056740.1.1 Tomato nucleus 59.17 55.56
Solyc06g059780.1.1 Tomato nucleus 58.58 55.0
Solyc06g054680.1.1 Tomato nucleus 58.58 55.0
Solyc04g056550.1.1 Tomato nucleus 57.99 53.85
Solyc01g097850.1.1 Tomato nucleus 52.66 51.74
Solyc10g018080.1.1 Tomato cytosol 43.79 49.01
Solyc06g065960.1.1 Tomato nucleus 26.04 48.35
Solyc04g025050.1.1 Tomato golgi, mitochondrion, nucleus, plastid 15.38 46.43
Solyc10g018110.1.1 Tomato nucleus 47.93 44.02
Solyc10g018070.1.1 Tomato nucleus 29.59 42.02
Solyc04g025970.1.1 Tomato cytosol, nucleus, peroxisome 28.99 41.88
Solyc03g033890.1.1 Tomato nucleus 34.32 41.43
Solyc03g034260.1.1 Tomato nucleus 44.97 41.3
Solyc03g033570.1.1 Tomato nucleus 42.01 39.01
Solyc03g007020.1.1 Tomato mitochondrion, nucleus, plastid 46.15 36.28
Solyc03g033900.1.1 Tomato nucleus 39.05 36.07
Solyc03g033880.1.1 Tomato cytosol 38.46 35.33
Solyc03g033940.1.1 Tomato nucleus 39.05 35.11
Solyc03g033930.1.1 Tomato cytosol 17.16 29.0
Solyc04g025030.1.1 Tomato mitochondrion 23.08 28.89
Solyc01g106710.1.1 Tomato nucleus 35.5 27.15
Solyc04g025110.1.1 Tomato mitochondrion, nucleus, plastid 20.71 26.92
Solyc01g106720.1.1 Tomato nucleus 31.36 25.12
Solyc01g106730.1.1 Tomato mitochondrion 30.77 23.53
AT1G29962.1 Thale cress nucleus 24.26 22.16
AT1G28460.1 Thale cress nucleus 23.67 21.98
Solyc04g047870.1.1 Tomato mitochondrion, nucleus 24.26 21.58
Solyc11g069770.1.1 Tomato nucleus 22.49 20.99
Solyc01g060310.1.1 Tomato nucleus, plastid 17.16 20.86
AT1G28450.1 Thale cress nucleus 22.49 20.54
CDX99867 Canola nucleus 23.08 20.1
CDY26304 Canola nucleus 21.3 19.46
Solyc04g064860.1.1 Tomato plastid 26.63 19.31
GSMUA_Achr4P28260_001 Banana nucleus 27.81 19.11
Bra032347.1-P Field mustard nucleus 20.71 18.82
Solyc01g106700.2.1 Tomato nucleus 23.08 18.31
AT1G54760.1 Thale cress nucleus 17.16 18.01
GSMUA_Achr5P01940_001 Banana nucleus 25.44 17.62
Solyc01g060300.1.1 Tomato nucleus 18.34 14.69
GSMUA_Achr5P01990_001 Banana nucleus 24.26 11.82
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0046983InterPro:IPR002100InterPro:IPR036879UniProt:K4D0P8PFAM:PF00319
PRINTS:PR00404PFscan:PS50066PANTHER:PTHR11945PANTHER:PTHR11945:SF185SMART:SM00432SUPFAM:SSF55455
EnsemblPlantsGene:Solyc10g050940.1EnsemblPlants:Solyc10g050940.1.1InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI000276A55DSEG:seg
Description
No Description!
Coordinates
chr10:+:51211701..51212210
Molecular Weight (calculated)
19624.3 Da
IEP (calculated)
7.767
GRAVY (calculated)
-0.668
Length
169 amino acids
Sequence
(BLAST)
001: MENKKAKGRQ KIPMKKMKNE KALLSSFSKR RDGLFKVANN LVKEFDVDIG IIVFAPTGKP YSFFHPTADA VISRFQNPDT QLSDETHLAM VFAQNSVNQL
101: EKKLEELDIK EKIESDRTNY LDQMTETRQK GWWESIEQLN EDEVSKFEAW LNVASFTMHY RLNQSIVSS
Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.