Factsheet for Solyc01g060310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	22.3	55.36
PGSC0003DMT400088636	Potato	mitochondrion	46.04	54.7
Solyc01g060300.1.1	Tomato	nucleus	76.26	50.24
PGSC0003DMT400016092	Potato	mitochondrion	64.03	45.18
PGSC0003DMT400090264	Potato	mitochondrion	43.88	40.13
PGSC0003DMT400092385	Potato	mitochondrion	56.12	39.59
PGSC0003DMT400097162	Potato	nucleus	45.32	38.18
PGSC0003DMT400097714	Potato	mitochondrion	40.29	37.33
PGSC0003DMT400097135	Potato	mitochondrion	48.2	35.45
PGSC0003DMT400094407	Potato	mitochondrion	48.2	31.75
PGSC0003DMT400094024	Potato	golgi, mitochondrion	41.01	31.15
PGSC0003DMT400086619	Potato	nucleus	39.57	29.57
Solyc04g025110.1.1	Tomato	mitochondrion, nucleus, plastid	27.34	29.23
Solyc04g025030.1.1	Tomato	mitochondrion	26.62	27.41
Solyc04g047870.1.1	Tomato	mitochondrion, nucleus	36.69	26.84
KRH41505	Soybean	cytosol, nucleus, plastid	30.22	26.09
Solyc01g106730.1.1	Tomato	mitochondrion	41.01	25.79
KRH60217	Soybean	nucleus	32.37	25.42
Solyc10g018070.1.1	Tomato	nucleus	20.86	24.37
AT3G66656.1	Thale cress	nucleus	30.94	24.16
KRH60216	Soybean	nucleus	31.65	23.78
Solyc11g069770.1.1	Tomato	nucleus	30.94	23.76
KRH41503	Soybean	nucleus	27.34	23.75
KRG99424	Soybean	nucleus	30.94	23.63
Solyc01g106710.1.1	Tomato	nucleus	37.41	23.53
VIT_00s0386g00010.t01	Wine grape	nucleus	33.81	23.15
AT2G34440.1	Thale cress	nucleus	28.06	22.67
Solyc01g106720.1.1	Tomato	nucleus	33.81	22.27
Bra001209.1-P	Field mustard	nucleus	28.06	21.79
CDX74094	Canola	nucleus	28.06	21.79
CDY57614	Canola	nucleus	28.06	21.79
KRH45604	Soybean	nucleus	29.5	21.69
Bra021910.1-P	Field mustard	nucleus	28.06	21.43
Solyc03g033890.1.1	Tomato	nucleus	21.58	21.43
Solyc04g056550.1.1	Tomato	nucleus	27.34	20.88
Solyc04g056740.1.1	Tomato	nucleus	25.18	19.44
Solyc10g050900.1.1	Tomato	nucleus	23.02	18.93
Solyc04g025970.1.1	Tomato	cytosol, nucleus, peroxisome	15.83	18.8
Solyc01g097850.1.1	Tomato	nucleus	23.02	18.6
Solyc01g106700.2.1	Tomato	nucleus	28.06	18.31
Solyc10g050950.1.1	Tomato	nucleus	20.86	18.01
Solyc10g018080.1.1	Tomato	cytosol	19.42	17.88
GSMUA_Achr5P01940_001	Banana	nucleus	30.94	17.62
Solyc10g018110.1.1	Tomato	nucleus	23.02	17.39
Solyc03g007020.1.1	Tomato	mitochondrion, nucleus, plastid	26.62	17.21
Solyc10g050940.1.1	Tomato	nucleus	20.86	17.16
Solyc03g033570.1.1	Tomato	nucleus	22.3	17.03
Solyc03g033900.1.1	Tomato	nucleus	22.3	16.94
Solyc03g033880.1.1	Tomato	cytosol	22.3	16.85
Solyc03g033940.1.1	Tomato	nucleus	22.3	16.49
Solyc04g064860.1.1	Tomato	plastid	27.34	16.31
Solyc06g059780.1.1	Tomato	nucleus	20.86	16.11
GSMUA_Achr4P28260_001	Banana	nucleus	28.06	15.85
Solyc03g034260.1.1	Tomato	nucleus	20.86	15.76
Solyc06g054680.1.1	Tomato	nucleus	20.14	15.56
PGSC0003DMT400090145	Potato	nucleus	14.39	13.24
PGSC0003DMT400092220	Potato	cytosol	10.79	11.72
PGSC0003DMT400086182	Potato	cytosol	10.07	10.94
GSMUA_Achr5P01990_001	Banana	nucleus	26.62	10.66
Solyc03g033930.1.1	Tomato	cytosol	1.44	2.0
Solyc06g065960.1.1	Tomato	nucleus	0.72	1.1

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K4AWD4
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc01g060310.1	EnsemblPlants:Solyc01g060310.1.1	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000276251E	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:70062006..70064703

Molecular Weight (calculated)

15118.4 Da

IEP (calculated)

8.987

GRAVY (calculated)

-0.027

Length

139 amino acids

Sequence
(BLAST)

001: MRKPNGRKKI EIAKIQNQTN LQVTFSKRRA GLFKKASELS TLCGANVAIV SFSPSNKVYA CGHPSVESIV DKFIGENTPP ETDDLNPIIV MGLSFLETDY
101: HLGPTTELAQ VCVPAARQMS GARSIIVVSQ CVLERLIAT

Best Arabidopsis Sequence Match ( AT1G01530.1 )
(BLAST)

001: MARKNLGRRK IELVKMTNES NLQVTFSKRR SGLFKKGSEL CTLCDAEIAI IVFSPSGKAY SFGHPNVNKL LDHSLGRVIR HNNTNFAESR TKLRIQMLNE
101: SLTEVMAEKE KEQETKQSIV QNERENKDAE KWWRNSPTEL NLAQSTSMKC DLEALKKEVD EKVAQLHHRN LNFYVGSSSN VAAPAAVSGG NISTNHGFFD
201: QNGNSTSAPT LPFGFNVMNR TPAGYNSYQL QNQEVKQVHP QYWARYY

Arabidopsis Description

AGL28AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.